OCA:1C5F

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Jmol JavaScript applet jmolApplet0__1368735344809697__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__1368735344809697__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1C5F"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

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Jmol getValue bgcolor #FFFFFF

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1c5f)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1c5f

The Resolver thinks MMCif

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TITLE: Crystal Structure of the Complex of Brugia Malayi Cyclophilin and Cyclosporin A.

ABA = ALPHA-AMINOBUTYRIC ACID

BMT = 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE

DAL = D-ALANINE

HOH = WATER

MLE = N-METHYLLEUCINE

MVA = N-METHYLVALINE

SAR = SARCOSINE

Setting space group name to HM:P 1 21 1

biomolecule 1 operators 1 ASYM_IDs A,B,Q,R

found biomolecule 1: A,B,Q,R

biomolecule 2 operators 1 ASYM_IDs C,D,S,T

found biomolecule 2: C,D,S,T

biomolecule 3 operators 1 ASYM_IDs E,F,U,V

found biomolecule 3: E,F,U,V

biomolecule 4 operators 1 ASYM_IDs G,H,W,X

found biomolecule 4: G,H,W,X

biomolecule 5 operators 1 ASYM_IDs I,J,Y,Z

found biomolecule 5: I,J,Y,Z

biomolecule 6 operators 1 ASYM_IDs K,L,AA,BA

found biomolecule 6: K,L,AA,BA

biomolecule 7 operators 1 ASYM_IDs M,N,CA,DA

found biomolecule 7: M,N,CA,DA

biomolecule 8 operators 1 ASYM_IDs O,P,EA

found biomolecule 8: O,P,EA

1C5F

88 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1c5f): 4216 ms

reading 11774 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

11774 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 281 ms