OCA:1CI3

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Jmol JavaScript applet jmolApplet0__873079353062805__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

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vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1CI3"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ci3)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ci3

The Resolver thinks MMCif

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TITLE: Structure of the soluble domain of cytochrome f from the cyanobacterium Phormidium laminosum.

TITLE: The Heme Redox Center of Chloroplast Cytochrome F is Linked to a Buried Five- Water Chain

HEC = HEME C

HOH = WATER

ZN = ZINC ION

Setting space group name to HM:H 3 2

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E

found biomolecule 1: A,B,C,D,E

biomolecule 2 operators 1,2,3,4,5,6 ASYM_IDs A,B,C,D,E

found biomolecule 2: A,B,C,D,E

biomolecule 3 operators 1,7 ASYM_IDs A,B,C,D,E

found biomolecule 3: A,B,C,D,E

assembly operator 1 x,y,z

assembly operator 2 -y+2,x-y+1,z

assembly operator 3 -x+y+1,-x+2,z

assembly operator 4 y,x,-z+1

assembly operator 5 x-y+1,-y+2,-z+1

assembly operator 6 -x+2,-x+y+1,-z+1

assembly operator 7 -x+4/3,-x+y+2/3,-z+2/3

1CI3

10 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ci3): 3202 ms

reading 2181 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

2181 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 92 ms