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Jmol JavaScript applet jmolApplet0__9394370060116852__ initializing

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Jmol getValue logLevel null

Jmol getValue allowjavascript null

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1CSA"

(C) 2015 Jmol Development

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1csa)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1csa

The Resolver thinks MMCif

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TITLE: The Mutant Escherichia Coli F112W Cyclophilin Binds Cyclosporin a in Nearly Identical Conformation as Human Cyclophilin.

TITLE: Three-Dimensional Solution Structure of Escherichia Coli Periplasmic Cyclophilin.

ABA = ALPHA-AMINOBUTYRIC ACID

BMT = 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE

DAL = D-ALANINE

MLE = N-METHYLLEUCINE

MVA = N-METHYLVALINE

SAR = SARCOSINE

Setting space group name to HM:P 1

biomolecule 1 operators 1 ASYM_IDs A

found biomolecule 1: A

1CSA

11 bonds added

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1csa): 3723 ms

reading 3528 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

18 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

3528 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.1 - 1CSA

    

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

    

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer in Java for our purposes.

    

Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.

    

All bioshapes have been deleted and must be regenerated.

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.2 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.3 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.4 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.5 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.6 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.7 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.8 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.9 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.10 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.11 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.12 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.13 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.14 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.15 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.16 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.17 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

Jmol 16.2.17 2024-06-07 15:31 DSSP analysis for model 1.18 - 1CSA

NOTE: Backbone amide hydrogen positions are present and will be ignored. Their positions will be approximated, as in standard DSSP analysis.

Use SET dsspCalculateHydrogenAlways FALSE to not use this approximation.

    

    

Time for creating model: 123 ms

TITLE: The Mutant Escherichia Coli F112W Cyclophilin Binds Cyclosporin a in Nearly Identical Conformation as Human Cyclophilin.

TITLE: Three-Dimensional Solution Structure of Escherichia Coli Periplasmic Cyclophilin.

ABA = ALPHA-AMINOBUTYRIC ACID

BMT = 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE

DAL = D-ALANINE

MLE = N-METHYLLEUCINE

MVA = N-METHYLVALINE

SAR = SARCOSINE

found biomolecule 1: A

1CSA

11 bonds added

    

18 models

    

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