OCA:1DDL

loadScript /oca-docs/jsmol/j2s/core/package.js

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__4015686059127184__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__4015686059127184__)

vwrOptions:

{ "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolApplet0","syncId":"4015686059127184","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolApplet0_canvas2d","documentBase":"https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1DDL","codePath":"https:/oca-docs/jsmol/j2s/","fullName":"jmolApplet0__4015686059127184__","statusListener":"[J.appletjs.Jmol object]" }

setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1DDL"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__4015686059127184__ ready

script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

Loading, please wait ...

antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ddl)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ddl

The Resolver thinks MMCif

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loadScript /oca-docs/jsmol/j2s/JU/CifDataParser.js

loadScript /oca-docs/jsmol/j2s/core/corebio.z.js

TITLE: Refined structure of desmodium yellow mottle tymovirus at 2.7 A resolution.

HOH = WATER

Setting space group name to HM:P 42 3 2

noncrystallographic symmetry operator 1 null

noncrystallographic symmetry operator 2 null

noncrystallographic symmetry operator 3 null

noncrystallographic symmetry operator 4 null

noncrystallographic symmetry operator 5 null

biomolecule 1 operators (1-60) ASYM_IDs A,B,C,D,E,F,G,H,I

found biomolecule 1: A,B,C,D,E,F,G,H,I

biomolecule 2 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I

found biomolecule 2: A,B,C,D,E,F,G,H,I

biomolecule 3 operators (1-5) ASYM_IDs A,B,C,D,E,F,G,H,I

found biomolecule 3: A,B,C,D,E,F,G,H,I

biomolecule 4 operators (1,2,6,10,23,24) ASYM_IDs A,B,C,D,E,F,G,H,I

found biomolecule 4: A,B,C,D,E,F,G,H,I

biomolecule 5 operators P ASYM_IDs A,B,C,D,E,F,G,H,I

found biomolecule 5: A,B,C,D,E,F,G,H,I

biomolecule 6 operators (X0)(1-5) ASYM_IDs A,B,C,D,E,F,G,H,I

found biomolecule 6: A,B,C,D,E,F,G,H,I

assembly operator P x,y,z

assembly operator X0 x,y,z

assembly operator 1 x,y,z

assembly operator 2 null

assembly operator 3 null

assembly operator 4 null

assembly operator 5 null

assembly operator 6 null

assembly operator 7 null

assembly operator 8 null

assembly operator 9 null

assembly operator 10 null

assembly operator 11 null

assembly operator 12 null

assembly operator 13 null

assembly operator 14 null

assembly operator 15 null

assembly operator 16 null

assembly operator 17 null

assembly operator 18 null

assembly operator 19 null

assembly operator 20 null

assembly operator 21 null

assembly operator 22 null

assembly operator 23 null

assembly operator 24 null

assembly operator 25 null

assembly operator 26 null

assembly operator 27 null

assembly operator 28 null

assembly operator 29 null

assembly operator 30 null

assembly operator 31 null

assembly operator 32 null

assembly operator 33 null

assembly operator 34 null

assembly operator 35 null

assembly operator 36 null

assembly operator 37 null

assembly operator 38 null

assembly operator 39 null

assembly operator 40 null

assembly operator 41 null

assembly operator 42 null

assembly operator 43 null

assembly operator 44 null

assembly operator 45 null

assembly operator 46 null

assembly operator 47 null

assembly operator 48 null

assembly operator 49 null

assembly operator 50 null

assembly operator 51 null

assembly operator 52 null

assembly operator 53 null

assembly operator 54 null

assembly operator 55 null

assembly operator 56 null

assembly operator 57 null

assembly operator 58 null

assembly operator 59 null

assembly operator 60 null

1DDL

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ddl): 3630 ms

reading 4670 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

4670 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 116 ms