Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
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loadScript /oca-docs/jsmol/j2s/J/translation/PO.js
loadScript /oca-docs/jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__241276059811852__ initializing
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Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__241276059811852__)
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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1F2N"
(C) 2015 Jmol Development
Jmol Version: 16.2.17 2024-06-07 15:31
java.vendor: Java2Script (HTML5)
java.version: 2022-06-24 05:54:49 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
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Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
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Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
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Jmol getValue AUDIOCallback null
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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1f2n)
FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1f2n
The Resolver thinks MMCif
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TITLE: 3D domain swapping modulates the stability of members of an icosahedral virus group.
TITLE: NUCLEOTIDE SEQUENCE AND GENOME CHARACTERIZATION OF RICE YELLOW MOTTLE VIRUS RNA
CA = CALCIUM ION
HOH = WATER
Setting space group name to HM:P 1 21 1
noncrystallographic symmetry operator 1 null
noncrystallographic symmetry operator 2 null
noncrystallographic symmetry operator 3 null
noncrystallographic symmetry operator 4 null
noncrystallographic symmetry operator 5 null
noncrystallographic symmetry operator 6 null
noncrystallographic symmetry operator 7 null
noncrystallographic symmetry operator 8 null
noncrystallographic symmetry operator 9 null
noncrystallographic symmetry operator 10 null
noncrystallographic symmetry operator 11 null
noncrystallographic symmetry operator 12 null
noncrystallographic symmetry operator 13 null
noncrystallographic symmetry operator 14 null
noncrystallographic symmetry operator 15 null
noncrystallographic symmetry operator 16 null
noncrystallographic symmetry operator 17 null
noncrystallographic symmetry operator 18 null
noncrystallographic symmetry operator 19 null
noncrystallographic symmetry operator 20 null
noncrystallographic symmetry operator 21 null
noncrystallographic symmetry operator 22 null
noncrystallographic symmetry operator 23 null
noncrystallographic symmetry operator 24 null
noncrystallographic symmetry operator 25 null
noncrystallographic symmetry operator 26 null
noncrystallographic symmetry operator 27 null
noncrystallographic symmetry operator 28 null
noncrystallographic symmetry operator 29 null
noncrystallographic symmetry operator 30 null
noncrystallographic symmetry operator 31 null
noncrystallographic symmetry operator 32 null
noncrystallographic symmetry operator 33 null
noncrystallographic symmetry operator 34 null
noncrystallographic symmetry operator 35 null
noncrystallographic symmetry operator 36 null
noncrystallographic symmetry operator 37 null
noncrystallographic symmetry operator 38 null
noncrystallographic symmetry operator 39 null
noncrystallographic symmetry operator 40 null
noncrystallographic symmetry operator 41 null
noncrystallographic symmetry operator 42 null
noncrystallographic symmetry operator 43 null
noncrystallographic symmetry operator 44 null
noncrystallographic symmetry operator 45 null
noncrystallographic symmetry operator 46 null
noncrystallographic symmetry operator 47 null
noncrystallographic symmetry operator 48 null
noncrystallographic symmetry operator 49 null
noncrystallographic symmetry operator 50 null
noncrystallographic symmetry operator 51 null
noncrystallographic symmetry operator 52 null
noncrystallographic symmetry operator 53 null
noncrystallographic symmetry operator 54 null
noncrystallographic symmetry operator 55 null
noncrystallographic symmetry operator 56 null
noncrystallographic symmetry operator 57 null
noncrystallographic symmetry operator 58 null
noncrystallographic symmetry operator 59 null
noncrystallographic symmetry operator 60 null
biomolecule 1 operators (1-60) ASYM_IDs A,B,C,D,E,F,G,H,I
found biomolecule 1: A,B,C,D,E,F,G,H,I
biomolecule 2 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I
found biomolecule 2: A,B,C,D,E,F,G,H,I
biomolecule 3 operators (1-5) ASYM_IDs A,B,C,D,E,F,G,H,I
found biomolecule 3: A,B,C,D,E,F,G,H,I
biomolecule 4 operators (1,2,6,10,23,24) ASYM_IDs A,B,C,D,E,F,G,H,I
found biomolecule 4: A,B,C,D,E,F,G,H,I
biomolecule 5 operators P ASYM_IDs A,B,C,D,E,F,G,H,I
found biomolecule 5: A,B,C,D,E,F,G,H,I
biomolecule 6 operators (X0)(1-60) ASYM_IDs A,B,C,D,E,F,G,H,I
found biomolecule 6: A,B,C,D,E,F,G,H,I
assembly operator P null
assembly operator X0 x,y,z
assembly operator 1 x,y,z
assembly operator 2 null
assembly operator 3 null
assembly operator 4 null
assembly operator 5 null
assembly operator 6 null
assembly operator 7 null
assembly operator 8 null
assembly operator 9 null
assembly operator 10 null
assembly operator 11 null
assembly operator 12 null
assembly operator 13 null
assembly operator 14 null
assembly operator 15 null
assembly operator 16 null
assembly operator 17 null
assembly operator 18 null
assembly operator 19 null
assembly operator 20 null
assembly operator 21 null
assembly operator 22 null
assembly operator 23 null
assembly operator 24 null
assembly operator 25 null
assembly operator 26 null
assembly operator 27 null
assembly operator 28 null
assembly operator 29 null
assembly operator 30 null
assembly operator 31 null
assembly operator 32 null
assembly operator 33 null
assembly operator 34 null
assembly operator 35 null
assembly operator 36 null
assembly operator 37 null
assembly operator 38 null
assembly operator 39 null
assembly operator 40 null
assembly operator 41 null
assembly operator 42 null
assembly operator 43 null
assembly operator 44 null
assembly operator 45 null
assembly operator 46 null
assembly operator 47 null
assembly operator 48 null
assembly operator 49 null
assembly operator 50 null
assembly operator 51 null
assembly operator 52 null
assembly operator 53 null
assembly operator 54 null
assembly operator 55 null
assembly operator 56 null
assembly operator 57 null
assembly operator 58 null
assembly operator 59 null
assembly operator 60 null
1F2N
17 bonds added
loadScript /oca-docs/jsmol/j2s/core/coresym.z.js
SpaceGroup - 0 settings generated
Precision set to 4; packing set to 0.02
Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1f2n): 5113 ms
reading 4730 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
4730 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 224 ms
TITLE: 3D domain swapping modulates the stability of members of an icosahedral virus group.
TITLE: NUCLEOTIDE SEQUENCE AND GENOME CHARACTERIZATION OF RICE YELLOW MOTTLE VIRUS RNA
CA = CALCIUM ION
HOH = WATER
found biomolecule 1: A,B,C,D,E,F,G,H,I
found biomolecule 2: A,B,C,D,E,F,G,H,I
found biomolecule 3: A,B,C,D,E,F,G,H,I
found biomolecule 4: A,B,C,D,E,F,G,H,I
found biomolecule 5: A,B,C,D,E,F,G,H,I
found biomolecule 6: A,B,C,D,E,F,G,H,I
1F2N
17 bonds added
Precision set to 4; packing set to 0.02
loadScript /oca-docs/jsmol/j2s/core/corescriptmath.z.js
loadScript /oca-docs/jsmol/j2s/J/thread/SpinThread.js
Script completed
Jmol script terminated
spinFPS is set too fast (30) -- can't keep up!
| 1F2N: reference: 3D domain swapping modulates the stability of members of an icosahedral virus group., Qu C, Liljas L, Opalka N, Brugidou C, Yeager M, Beachy RN, Fauquet CM, Johnson JE, Lin T, Structure Fold Des 2000 Oct 15;8(10):1095-103. PMID: 11080631 |
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