Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
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loadScript /oca-docs/jsmol/j2s/core/corejmol.z.js
loadScript /oca-docs/jsmol/j2s/J/translation/PO.js
loadScript /oca-docs/jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__2064448017178031__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__2064448017178031__)
vwrOptions:
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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1FWS"
(C) 2015 Jmol Development
Jmol Version: 16.2.17 2024-06-07 15:31
java.vendor: Java2Script (HTML5)
java.version: 2022-06-24 05:54:49 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
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memory: 0.0/0.0
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useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
StatusManager APPLETREADYcallback set f=Jmol._readyCallback
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue MODELKITCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SELECTCallback null
Jmol getValue SERVICECallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue SYNCCallback null
Jmol getValue doTranslate null
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Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
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loadScript /oca-docs/jsmol/j2s/core/coretext.z.js
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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1fws)
FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1fws
The Resolver thinks MMCif
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TITLE: Electronic structure of the metal center in the Cd(2+), Zn(2+), and Cu(2+) substituted forms of KDO8P synthase: implications for catalysis.
CD = CADMIUM ION
HOH = WATER
PEP = PHOSPHOENOLPYRUVATE
PO4 = PHOSPHATE ION
Setting space group name to HM:P 31 2 1
biomolecule 1 operators 1,2 ASYM_IDs A,B,C,D,E,F,G,H,I,J
found biomolecule 1: A,B,C,D,E,F,G,H,I,J
assembly operator 1 x,y,z
assembly operator 2 y,x,-z
1FWS
12 bonds added
loadScript /oca-docs/jsmol/j2s/core/coresym.z.js
SpaceGroup - 0 settings generated
Precision set to 4; packing set to 0.02
Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1fws): 5304 ms
reading 4378 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
4378 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 198 ms
TITLE: Electronic structure of the metal center in the Cd(2+), Zn(2+), and Cu(2+) substituted forms of KDO8P synthase: implications for catalysis.
CD = CADMIUM ION
HOH = WATER
PEP = PHOSPHOENOLPYRUVATE
PO4 = PHOSPHATE ION
found biomolecule 1: A,B,C,D,E,F,G,H,I,J
1FWS
12 bonds added
Precision set to 4; packing set to 0.02
loadScript /oca-docs/jsmol/j2s/core/corescriptmath.z.js
loadScript /oca-docs/jsmol/j2s/J/thread/SpinThread.js
Script completed
Jmol script terminated
spinFPS is set too fast (30) -- can't keep up!
| 1FWS: reference: Electronic structure of the metal center in the Cd(2+), Zn(2+), and Cu(2+) substituted forms of KDO8P synthase: implications for catalysis., Kona F, Tao P, Martin P, Xu X, Gatti DL, Biochemistry. 2009 Apr 28;48(16):3610-30. PMID: 19228070 |
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