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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1jdg)

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TITLE: Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex: evidence for a major syn conformation.

BPA = 7S,8R,9R-TRIHYDROXY-7,8,9,10-TETRAHYDRO BENZO[A]PYRENE

biomolecule 1 operators 1 ASYM_IDs A,B,C

found biomolecule 1: A,B,C

1JDG

1 bonds added

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1jdg): 603 ms

reading 731 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

731 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 41 ms

TITLE: Solution structure of a trans-opened (10S)-dA adduct of (+)-(7S,8R,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene in a fully complementary DNA duplex: evidence for a major syn conformation.

BPA = 7S,8R,9R-TRIHYDROXY-7,8,9,10-TETRAHYDRO BENZO[A]PYRENE

found biomolecule 1: A,B,C

1JDG

1 bonds added

    

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