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Jmol JavaScript applet jmolApplet0__1806342214206964__ initializing
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(C) 2015 Jmol Development
Jmol Version: 16.2.17 2024-06-07 15:31
java.vendor: Java2Script (HTML5)
java.version: 2022-06-24 05:54:49 (JSmol/j2s)
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FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ppm
The Resolver thinks MMCif
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TITLE: Crystallographic analysis of transition-state mimics bound to penicillopepsin: phosphorus-containing peptide analogues.
TITLE: Aspartic Proteinases and Their Catalytic Pathway
TITLE: Stereochemical Analysis of Peptide Bond Hydrolysis Catalyzed by the Aspartic Proteinase Penicillopepsin
TITLE: Structure and Refinement of Penicillopepsin at 1.8 Angstroms Resolution
TITLE: Conformational Flexibility in the Active Sites of Aspartyl Proteinases Revealed by a Pepstatin Fragment Binding to Penicillopepsin
TITLE: The Tertiary Structure of Penicillopepsin. Towards a Catalytic Mechanism for Acid Proteases
TITLE: An X-Ray Crystallographic Approach to Enzyme Structure and Function
TITLE: Structural Evidence for Gene Duplication in the Evolution of the Acid Proteases
TITLE: Mechanism of Acid Protease Catalysis Based on the Crystal Structure of Penicillopepsin
TITLE: Penicillopepsin from Penicillium Janthinellum Crystal Structure at 2.8 Angstroms and Sequence Homology with Porcine Pepsin
TITLE: Penicillopepsin. 2.8 Angstroms Structure, Active Site Conformation and Mechanistic Implications
TITLE: The Crystal Structure of Penicillopepsin at 6 Angstroms Resolution
0P1 = N-[(benzyloxy)carbonyl]-L-alanyl-N-{(1S)-1-[(R)-[(1R)-1-benzyl-2-methoxy-2-oxoethoxy](hydroxy)phosphoryl]-3-methylbutyl }-L-alaninamide
ARA = alpha-L-arabinopyranose
HOH = WATER
MAN = alpha-D-mannopyranose
SO4 = SULFATE ION
Setting space group name to HM:C 1 2 1
biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F
found biomolecule 1: A,B,C,D,E,F
1PPM
3 bonds added
loadScript /oca-docs/jsmol/j2s/core/coresym.z.js
SpaceGroup - 0 settings generated
Precision set to 4; packing set to 0.02
Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1ppm): 2600 ms
reading 2739 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
2739 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 87 ms
TITLE: Crystallographic analysis of transition-state mimics bound to penicillopepsin: phosphorus-containing peptide analogues.
TITLE: Aspartic Proteinases and Their Catalytic Pathway
TITLE: Stereochemical Analysis of Peptide Bond Hydrolysis Catalyzed by the Aspartic Proteinase Penicillopepsin
TITLE: Structure and Refinement of Penicillopepsin at 1.8 Angstroms Resolution
TITLE: Conformational Flexibility in the Active Sites of Aspartyl Proteinases Revealed by a Pepstatin Fragment Binding to Penicillopepsin
TITLE: The Tertiary Structure of Penicillopepsin. Towards a Catalytic Mechanism for Acid Proteases
TITLE: An X-Ray Crystallographic Approach to Enzyme Structure and Function
TITLE: Structural Evidence for Gene Duplication in the Evolution of the Acid Proteases
TITLE: Mechanism of Acid Protease Catalysis Based on the Crystal Structure of Penicillopepsin
TITLE: Penicillopepsin from Penicillium Janthinellum Crystal Structure at 2.8 Angstroms and Sequence Homology with Porcine Pepsin
TITLE: Penicillopepsin. 2.8 Angstroms Structure, Active Site Conformation and Mechanistic Implications
TITLE: The Crystal Structure of Penicillopepsin at 6 Angstroms Resolution
0P1 = N-[(benzyloxy)carbonyl]-L-alanyl-N-{(1S)-1-[(R)-[(1R)-1-benzyl-2-methoxy-2-oxoethoxy](hydroxy)phosphoryl]-3-methylbutyl }-L-alaninamide
ARA = alpha-L-arabinopyranose
HOH = WATER
MAN = alpha-D-mannopyranose
SO4 = SULFATE ION
found biomolecule 1: A,B,C,D,E,F
1PPM
3 bonds added
Precision set to 4; packing set to 0.02
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