OCA:1QI2

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__186856616383714__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__186856616383714__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1QI2"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

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Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1qi2)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1qi2

The Resolver thinks MMCif

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TITLE: Insights into ligand-induced conformational change in Cel5A from Bacillus agaradhaerens revealed by a catalytically active crystal form.

BGC = beta-D-glucopyranose

CA = CALCIUM ION

G2F = 2-deoxy-2-fluoro-alpha-D-glucopyranose

HOH = WATER

Setting space group name to HM:P 43 21 2

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H

found biomolecule 1: A,B,C,D,E,F,G,H

biomolecule 2 operators 1,2 ASYM_IDs A,B,C,D,E,F,G,H

found biomolecule 2: A,B,C,D,E,F,G,H

biomolecule 3 operators 1,3 ASYM_IDs A,B,C,D,E,F,G,H

found biomolecule 3: A,B,C,D,E,F,G,H

assembly operator 1 x,y,z

assembly operator 2 y-1,x+1,-z

assembly operator 3 -y+1,-x+1,-z+1/2

1QI2

30 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1qi2): 2360 ms

reading 2813 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

2813 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 85 ms