OCA:1QMD

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__3725499362032543__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__3725499362032543__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1QMD"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

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Jmol getValue SYNCCallback null

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Jmol applet jmolApplet0__3725499362032543__ ready

script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1qmd)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1qmd

The Resolver thinks MMCif

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TITLE: Characterisation of the Calcium-Binding C-Terminal Domain of Clostridium Perfringens Alpha-Toxin

TITLE: Structure of the Key Toxin in Gas-Gangrene

TITLE: Crystallisation and Preliminary X-Ray Diffraction Studies of Alpha-Toxin from Two Different Strains (Nctc-8237 and Cer89L43) of Clostridium Perfringens

Setting space group name to HM:H 3 2

CA = CALCIUM ION

HOH = WATER

ZN = ZINC ION

1QMD

biomolecule 1 operators 1 ASYM_IDs A,C,D,E,F,G,M

found biomolecule 1: A,C,D,E,F,G,M

biomolecule 2 operators 1 ASYM_IDs B,H,I,J,K,L,N

found biomolecule 2: B,H,I,J,K,L,N

217 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1qmd): 6876 ms

reading 6351 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

6351 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 177 ms