OCA:1WKD

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__879574169914982__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__879574169914982__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=1WKD"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

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Jmol getValue SYNCCallback null

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Jmol applet jmolApplet0__879574169914982__ ready

script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

Loading, please wait ...

antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1wkd)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1wkd

The Resolver thinks MMCif

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loadScript /oca-docs/jsmol/j2s/core/corebio.z.js

TITLE: Mutagenesis and crystallographic studies of Zymomonas mobilis tRNA-guanine transglycosylase reveal aspartate 102 as the active site nucleophile.

TITLE: Purification, Crystallization, and Preliminary X-Ray Diffraction Studies of tRNA-Guanine Transglycosylase from Zymomonas Mobilis

TITLE: Crystal Structure of tRNA-Guanine Transglycosylase: RNA Modification by Base Exchange

TITLE: Sequence Analysis and Overexpression of the Zymomonas Mobilis Tgt Gene Encoding tRNA-Guanine Transglycosylase: Purification and Biochemical Characterization of the Enzyme

HOH = WATER

ZN = ZINC ION

Setting space group name to HM:C 1 2 1

biomolecule 1 operators 1 ASYM_IDs A,B,C

found biomolecule 1: A,B,C

biomolecule 2 operators 1,2 ASYM_IDs A,B,C

found biomolecule 2: A,B,C

assembly operator 1 x,y,z

assembly operator 2 -x,y,-z

1WKD

4 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=1wkd): 5072 ms

reading 3064 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

3064 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 157 ms

TITLE: Mutagenesis and crystallographic studies of Zymomonas mobilis tRNA-guanine transglycosylase reveal aspartate 102 as the active site nucleophile.

TITLE: Purification, Crystallization, and Preliminary X-Ray Diffraction Studies of tRNA-Guanine Transglycosylase from Zymomonas Mobilis

TITLE: Crystal Structure of tRNA-Guanine Transglycosylase: RNA Modification by Base Exchange

TITLE: Sequence Analysis and Overexpression of the Zymomonas Mobilis Tgt Gene Encoding tRNA-Guanine Transglycosylase: Purification and Biochemical Characterization of the Enzyme

HOH = WATER

ZN = ZINC ION

found biomolecule 1: A,B,C

found biomolecule 2: A,B,C

1WKD

4 bonds added

Precision set to 4; packing set to 0.02

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loadScript /oca-docs/jsmol/j2s/J/thread/SpinThread.js

Script completed

Jmol script terminated

spinFPS is set too fast (30) -- can't keep up!