OCA:2CDV

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__3400512731025165__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__3400512731025165__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=2CDV"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

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Jmol getValue SYNCCallback null

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Jmol applet jmolApplet0__3400512731025165__ ready

script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=2cdv)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=2cdv

The Resolver thinks MMCif

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TITLE: Refined structure of cytochrome c3 at 1.8 A resolution

TITLE: On Cytochrome C3 Folding

TITLE: The Structure of Cytochrome C3 from Desulfovibrio Vulgaris Miyazaki at 2.5 Angstroms Resolution

TITLE: Amino Acid Sequence of Cytochrome C3 from Desulfovibrio Vulgaris, Miyazaki

TITLE: Crystallographic Data for Cytochrome C3 from Two Strains of Desulfovibrio Vulgaris, Miyazaki

HEC = HEME C

HOH = WATER

Setting space group name to HM:P 21 21 21

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F

found biomolecule 1: A,B,C,D,E,F

2CDV

16 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=2cdv): 1390 ms

reading 1020 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1020 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 47 ms