OCA:2XBN

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__124796220651132__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__124796220651132__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=2XBN"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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memory: 0.0/0.0

processors available: 1

useCommandThread: false

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=2xbn)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=2xbn

The Resolver thinks MMCif

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TITLE: Inhibition of the Plp-Dependent Enzyme Serine Palmitoyltransferase by Cycloserine: Evidence for a Novel Decarboxylative Mechanism of Inactivation.

HOH = WATER

MG = MAGNESIUM ION

PMP = 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

Setting space group name to HM:C 2 2 21

biomolecule 1 operators 1,2 ASYM_IDs A,B,C,D

found biomolecule 1: A,B,C,D

assembly operator 1 x,y,z

assembly operator 2 -x,y,-z+1/2

2XBN

3 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=2xbn): 4392 ms

reading 3360 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

3360 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 102 ms

TITLE: Inhibition of the Plp-Dependent Enzyme Serine Palmitoyltransferase by Cycloserine: Evidence for a Novel Decarboxylative Mechanism of Inactivation.

HOH = WATER

MG = MAGNESIUM ION

PMP = 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

found biomolecule 1: A,B,C,D

2XBN

3 bonds added

Precision set to 4; packing set to 0.02

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