OCA:3D39

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__916244176077872__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__916244176077872__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=3D39"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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processors available: 1

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3d39)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3d39

The Resolver thinks MMCif

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TITLE: Fluorine substitutions in an antigenic peptide selectively modulate T-cell receptor binding in a minimally perturbing manner

Setting space group name to HM:C 1 2 1

GOL = GLYCEROL

HOH = WATER

PFF = 4-FLUORO-L-PHENYLALANINE

3D39

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M

200 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3d39): 2286 ms

reading 6718 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

6718 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 199 ms

TITLE: Fluorine substitutions in an antigenic peptide selectively modulate T-cell receptor binding in a minimally perturbing manner

GOL = GLYCEROL

HOH = WATER

PFF = 4-FLUORO-L-PHENYLALANINE

3D39

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M

200 bonds added

Precision set to 4; packing set to 0.02

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Script completed

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