OCA:3HAM

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Jmol JavaScript applet jmolApplet0__668838148774001__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

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AppletRegistry.checkIn(jmolApplet0__668838148774001__)

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=3HAM"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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script 1 started

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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3ham)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3ham

The Resolver thinks MMCif

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TITLE: The crystal structures of substrate and nucleotide complexes of Enterococcus faecium aminoglycoside-2''-phosphotransferase-IIa [APH(2'')-IIa] provide insights into substrate selectivity in the APH(2'') subfamily.

GOL = GLYCEROL

HOH = WATER

LLL = (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL

Setting space group name to HM:P 1 21 1

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J

found biomolecule 1: A,B,C,D,E,F,G,H,I,J

biomolecule 2 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J

found biomolecule 2: A,B,C,D,E,F,G,H,I,J

3HAM

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3ham): 2387 ms

reading 5302 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

5302 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 119 ms

GOL = GLYCEROL

HOH = WATER

LLL = (2R,3R,4R,5R)-2-((1S,2S,3R,4S,6R)-4,6-DIAMINO-3-((2R,3R,6S)-3-AMINO-6-(AMINOMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-2-HYDR OXYCYCLOHEXYLOXY)-5-METHYL-4-(METHYLAMINO)-TETRAHYDRO-2H-PYRAN-3,5-DIOL

found biomolecule 1: A,B,C,D,E,F,G,H,I,J

found biomolecule 2: A,B,C,D,E,F,G,H,I,J

3HAM

Precision set to 4; packing set to 0.02

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Script completed

Jmol script terminated