OCA:3HW9

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Jmol JavaScript applet jmolApplet0__497493678539128__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__497493678539128__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=3HW9"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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processors available: 1

useCommandThread: false

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Jmol getValue emulate null

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3hw9)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3hw9

The Resolver thinks MMCif

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TITLE: Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction.

Setting space group name to HM:P 63

CL = CHLORIDE ION

HOH = WATER

K = POTASSIUM ION

P6G = HEXAETHYLENE GLYCOL

3HW9

biomolecule 1 operators 1,2,3 ASYM_IDs A,C,D,E,K

found biomolecule 1: A,C,D,E,K

biomolecule 2 operators 1,4,5 ASYM_IDs B,F,G,H,I,J,L

found biomolecule 2: B,F,G,H,I,J,L

biomolecule 3 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L

found biomolecule 3: A,B,C,D,E,F,G,H,I,J,K,L

assembly operator 1 x,y,z

assembly operator 2 -y,x-y,z

assembly operator 3 -x+y,-x,z

assembly operator 4 -y-1,x-y-1,z

assembly operator 5 -x+y,-x-1,z

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3hw9): 2900 ms

reading 5416 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

5416 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 347 ms

TITLE: Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction.

CL = CHLORIDE ION

HOH = WATER

K = POTASSIUM ION

P6G = HEXAETHYLENE GLYCOL

3HW9

found biomolecule 1: A,C,D,E,K

found biomolecule 2: B,F,G,H,I,J,L

found biomolecule 3: A,B,C,D,E,F,G,H,I,J,K,L

Precision set to 4; packing set to 0.02

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Script completed

Jmol script terminated

spinFPS is set too fast (30) -- can't keep up!