OCA:3IQB

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__001016693647505__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__001016693647505__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=3IQB"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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Jmol getValue CLICKCallback null

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Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue SCRIPTCallback null

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Jmol getValue SYNCCallback null

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3iqb)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3iqb

The Resolver thinks MMCif

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TITLE: Determinants of Ligand Affinity and Heme Reactivity in H-NOX Domains.

Setting space group name to HM:P 64 2 2

HEM = PROTOPORPHYRIN IX CONTAINING FE

HOH = WATER

OXY = OXYGEN MOLECULE

SO4 = SULFATE ION

3IQB

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E

found biomolecule 1: A,B,C,D,E

205 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3iqb): 1815 ms

reading 1664 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

1664 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 79 ms

TITLE: Determinants of Ligand Affinity and Heme Reactivity in H-NOX Domains.

HEM = PROTOPORPHYRIN IX CONTAINING FE

HOH = WATER

OXY = OXYGEN MOLECULE

SO4 = SULFATE ION

3IQB

found biomolecule 1: A,B,C,D,E

205 bonds added

Precision set to 4; packing set to 0.02

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Script completed

Jmol script terminated