OCA:3J06

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__769130634537934__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__769130634537934__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=3J06"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

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Jmol getValue load null

Jmol applet jmolApplet0__769130634537934__ ready

script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3j06)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3j06

The Resolver thinks MMCif

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TITLE: Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches.

Setting space group name to HM:P 1

biomolecule 1 operators (1-49) ASYM_IDs A,B

found biomolecule 1: A,B

biomolecule 2 operators 25 ASYM_IDs A,B

found biomolecule 2: A,B

biomolecule 3 operators H ASYM_IDs A,B

found biomolecule 3: A,B

assembly operator H x,y,z

assembly operator 1 null

assembly operator 2 null

assembly operator 3 null

assembly operator 4 null

assembly operator 5 null

assembly operator 6 null

assembly operator 7 null

assembly operator 8 null

assembly operator 9 null

assembly operator 10 null

assembly operator 11 null

assembly operator 12 null

assembly operator 13 null

assembly operator 14 null

assembly operator 15 null

assembly operator 16 null

assembly operator 17 null

assembly operator 18 null

assembly operator 19 null

assembly operator 20 null

assembly operator 21 null

assembly operator 22 null

assembly operator 23 null

assembly operator 24 null

assembly operator 25 x,y,z

assembly operator 26 null

assembly operator 27 null

assembly operator 28 null

assembly operator 29 null

assembly operator 30 null

assembly operator 31 null

assembly operator 32 null

assembly operator 33 null

assembly operator 34 null

assembly operator 35 null

assembly operator 36 null

assembly operator 37 null

assembly operator 38 null

assembly operator 39 null

assembly operator 40 null

assembly operator 41 null

assembly operator 42 null

assembly operator 43 null

assembly operator 44 null

assembly operator 45 null

assembly operator 46 null

assembly operator 47 null

assembly operator 48 null

assembly operator 49 null

3J06

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3j06): 3787 ms

reading 1284 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

1284 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 83 ms

TITLE: Hydrogen-bonding networks and RNA bases revealed by cryo electron microscopy suggest a triggering mechanism for calcium switches.

found biomolecule 1: A,B

found biomolecule 2: A,B

found biomolecule 3: A,B

3J06

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Script completed

Jmol script terminated