OCA:3WI9

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__8224917525700586__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__8224917525700586__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=3WI9"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3wi9)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3wi9

The Resolver thinks MMCif

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TITLE: Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner

Setting space group name to HM:H 3

ACY = ACETIC ACID

CU = COPPER (II) ION

HOH = WATER

MPD = (4S)-2-METHYL-2,4-PENTANEDIOL

NA = SODIUM ION

SO4 = SULFATE ION

ZN = ZINC ION

3WI9

biomolecule 1 operators 1,2,3 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L

assembly operator 1 x,y,z

assembly operator 2 -y,x-y,z

assembly operator 3 -x+y,-x,z

215 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=3wi9): 4817 ms

reading 2735 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

2735 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 106 ms