OCA:4DII

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Jmol JavaScript applet jmolApplet0__90397626710799__ initializing

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AppletRegistry.checkIn(jmolApplet0__90397626710799__)

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=4DII"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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script 1 started

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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4dii)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4dii

The Resolver thinks MMCif

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TITLE: High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity.

TITLE: Thrombin-aptamer recognition: a revealed ambiguity.

TITLE: The structure of alpha-thrombin inhibited by a 15-mer single-stranded DNA aptamer.

TITLE: An ambiguous structure of a DNA 15-mer thrombin complex.

0G6 = D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide

CL = CHLORIDE ION

HOH = WATER

K = POTASSIUM ION

NA = SODIUM ION

NAG = 2-acetamido-2-deoxy-beta-D-glucopyranose

ZN = ZINC ION

Setting space group name to HM:P 1

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M,N

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N

4DII

17 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4dii): 3604 ms

reading 2814 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

2814 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 110 ms