OCA:4DVT

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__227231678441658__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__227231678441658__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=4DVT"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

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Jmol getValue bgcolor #FFFFFF

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4dvt)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4dvt

The Resolver thinks MMCif

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TITLE: Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site.

0LZ = N-(4-chloro-3-fluorophenyl)-N'-[(1S)-1,2,3,4-tetrahydroisoquinolin-1-ylmethyl]ethanediamide

EPE = 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

HOH = WATER

NAG = 2-acetamido-2-deoxy-beta-D-glucopyranose

Setting space group name to HM:P 1 21 1

biomolecule 1 operators 1 ASYM_IDs A,C,D,E,F,G,H,I,J,K,L,M,N,O,CA

found biomolecule 1: A,C,D,E,F,G,H,I,J,K,L,M,N,O,CA

biomolecule 2 operators 1 ASYM_IDs B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA

found biomolecule 2: B,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA

4DVT

36 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4dvt): 3223 ms

reading 5837 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

5837 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 196 ms