OCA:4JUG

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__670048450343877__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__670048450343877__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=4JUG"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

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Jmol applet jmolApplet0__670048450343877__ ready

script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

Loading, please wait ...

antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4jug)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4jug

The Resolver thinks MMCif

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loadScript /oca-docs/jsmol/j2s/J/adapter/readers/cif/CifReader.js

loadScript /oca-docs/jsmol/j2s/JU/CifDataParser.js

loadScript /oca-docs/jsmol/j2s/core/corebio.z.js

TITLE: Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution

BMA = beta-D-mannopyranose

HOH = WATER

NAG = 2-acetamido-2-deoxy-beta-D-glucopyranose

Setting space group name to HM:P 3

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,M,N,O,P,U,V,W,X,Y,Z

found biomolecule 1: A,B,C,D,E,F,M,N,O,P,U,V,W,X,Y,Z

biomolecule 2 operators 1 ASYM_IDs G,H,I,J,K,L,Q,R,S,T,AA,BA,CA,DA,EA,FA

found biomolecule 2: G,H,I,J,K,L,Q,R,S,T,AA,BA,CA,DA,EA,FA

4JUG

54 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4jug): 8315 ms

reading 23611 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

23611 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 447 ms

TITLE: Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution

BMA = beta-D-mannopyranose

HOH = WATER

NAG = 2-acetamido-2-deoxy-beta-D-glucopyranose

found biomolecule 1: A,B,C,D,E,F,M,N,O,P,U,V,W,X,Y,Z

found biomolecule 2: G,H,I,J,K,L,Q,R,S,T,AA,BA,CA,DA,EA,FA

4JUG

54 bonds added

Precision set to 4; packing set to 0.02

loadScript /oca-docs/jsmol/j2s/J/thread/SpinThread.js

Script completed

Jmol script terminated

spinFPS is set too fast (30) -- can't keep up!