Jmol._Canvas2D (Jmol) "jmolApplet0"[x]
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loadScript /oca-docs/jsmol/j2s/core/corejmol.z.js
loadScript /oca-docs/jsmol/j2s/J/translation/PO.js
loadScript /oca-docs/jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__029736429624918__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__029736429624918__)
vwrOptions:
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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=4PDW"
(C) 2015 Jmol Development
Jmol Version: 16.2.17 2024-06-07 15:31
java.vendor: Java2Script (HTML5)
java.version: 2022-06-24 05:54:49 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
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processors available: 1
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appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
StatusManager APPLETREADYcallback set f=Jmol._readyCallback
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
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Jmol getValue EVALCallback null
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Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
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Jmol getValue SYNCCallback null
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Jmol applet jmolApplet0__029736429624918__ ready
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loadScript /oca-docs/jsmol/j2s/core/coretext.z.js
Loading, please wait ...
antialiasDisplay = false
FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4pdw)
FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4pdw
The Resolver thinks MMCif
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loadScript /oca-docs/jsmol/j2s/J/adapter/readers/cif/CifReader.js
loadScript /oca-docs/jsmol/j2s/JU/CifDataParser.js
loadScript /oca-docs/jsmol/j2s/core/corebio.z.js
TITLE: A novel benzonitrile analogue inhibits rhinovirus replication.
Setting space group name to HM:P 21 3
2XK = 4-[(4,5-dimethoxy-2-nitrophenyl)acetyl]benzonitrile
GOL = GLYCEROL
HOH = WATER
noncrystallographic symmetry operator 1 null
noncrystallographic symmetry operator 2 null
noncrystallographic symmetry operator 3 null
noncrystallographic symmetry operator 4 null
noncrystallographic symmetry operator 5 null
noncrystallographic symmetry operator 6 null
noncrystallographic symmetry operator 7 null
noncrystallographic symmetry operator 8 null
noncrystallographic symmetry operator 9 null
noncrystallographic symmetry operator 10 null
noncrystallographic symmetry operator 11 null
noncrystallographic symmetry operator 12 null
noncrystallographic symmetry operator 13 null
noncrystallographic symmetry operator 14 null
noncrystallographic symmetry operator 15 null
noncrystallographic symmetry operator 16 null
noncrystallographic symmetry operator 17 null
noncrystallographic symmetry operator 18 null
noncrystallographic symmetry operator 19 null
noncrystallographic symmetry operator 20 null
4PDW
biomolecule 1 operators (1-60) ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M
biomolecule 2 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 2: A,B,C,D,E,F,G,H,I,J,K,L,M
biomolecule 3 operators (1-5) ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 3: A,B,C,D,E,F,G,H,I,J,K,L,M
biomolecule 4 operators (1,2,6,10,23,24) ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 4: A,B,C,D,E,F,G,H,I,J,K,L,M
biomolecule 5 operators P ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 5: A,B,C,D,E,F,G,H,I,J,K,L,M
assembly operator P null
assembly operator 1 x,y,z
assembly operator 2 null
assembly operator 3 null
assembly operator 4 null
assembly operator 5 null
assembly operator 6 null
assembly operator 7 null
assembly operator 8 null
assembly operator 9 null
assembly operator 10 null
assembly operator 11 null
assembly operator 12 null
assembly operator 13 null
assembly operator 14 null
assembly operator 15 null
assembly operator 16 null
assembly operator 17 null
assembly operator 18 null
assembly operator 19 null
assembly operator 20 null
assembly operator 21 null
assembly operator 22 null
assembly operator 23 null
assembly operator 24 null
assembly operator 25 null
assembly operator 26 null
assembly operator 27 null
assembly operator 28 null
assembly operator 29 null
assembly operator 30 null
assembly operator 31 null
assembly operator 32 null
assembly operator 33 null
assembly operator 34 null
assembly operator 35 null
assembly operator 36 null
assembly operator 37 null
assembly operator 38 null
assembly operator 39 null
assembly operator 40 null
assembly operator 41 null
assembly operator 42 null
assembly operator 43 null
assembly operator 44 null
assembly operator 45 null
assembly operator 46 null
assembly operator 47 null
assembly operator 48 null
assembly operator 49 null
assembly operator 50 null
assembly operator 51 null
assembly operator 52 null
assembly operator 53 null
assembly operator 54 null
assembly operator 55 null
assembly operator 56 null
assembly operator 57 null
assembly operator 58 null
assembly operator 59 null
assembly operator 60 null
loadScript /oca-docs/jsmol/j2s/core/coresym.z.js
SpaceGroup - 0 settings generated
Precision set to 4; packing set to 0.02
Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4pdw): 4604 ms
reading 6358 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
6358 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 170 ms
TITLE: A novel benzonitrile analogue inhibits rhinovirus replication.
2XK = 4-[(4,5-dimethoxy-2-nitrophenyl)acetyl]benzonitrile
GOL = GLYCEROL
HOH = WATER
4PDW
found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 2: A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 3: A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 4: A,B,C,D,E,F,G,H,I,J,K,L,M
found biomolecule 5: A,B,C,D,E,F,G,H,I,J,K,L,M
Precision set to 4; packing set to 0.02
loadScript /oca-docs/jsmol/j2s/core/corescriptmath.z.js
loadScript /oca-docs/jsmol/j2s/J/thread/SpinThread.js
Script completed
Jmol script terminated
spinFPS is set too fast (30) -- can't keep up!
| 4PDW: reference: A novel benzonitrile analogue inhibits rhinovirus replication., Lacroix C, Querol-Audi J, Roche M, Franco D, Froeyen M, Guerra P, Terme T, Vanelle P, Verdaguer N, Neyts J, Leyssen P, J Antimicrob Chemother. 2014 Jun 19. pii: dku200. PMID: 24948704 |
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