OCA:4URH

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__683861492987309__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__683861492987309__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=4URH"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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processors available: 1

useCommandThread: false

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Jmol getValue emulate null

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Jmol getValue bgcolor #FFFFFF

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Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

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Jmol applet jmolApplet0__683861492987309__ ready

script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4urh)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4urh

The Resolver thinks MMCif

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TITLE: Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.

TITLE: Structural Differences between the Ready and Unready Oxidized States of [Nife] Hydrogenases.

CSX = S-OXY CYSTEINE

F3S = FE3-S4 CLUSTER

FCO = CARBONMONOXIDE-(DICYANO) IRON

GOL = GLYCEROL

HOH = WATER

MG = MAGNESIUM ION

NI = NICKEL (II) ION

SF4 = IRON/SULFUR CLUSTER

Setting space group name to HM:P 1 21 1

biomolecule 1 operators 1 ASYM_IDs C,F,O,P,Q,AA,BA,CA,DA,GA,JA

found biomolecule 1: C,F,O,P,Q,AA,BA,CA,DA,GA,JA

biomolecule 2 operators 1 ASYM_IDs A,D,G,H,I,J,K,R,S,T,U,V,EA,HA

found biomolecule 2: A,D,G,H,I,J,K,R,S,T,U,V,EA,HA

biomolecule 3 operators 1 ASYM_IDs B,E,L,M,N,W,X,Y,Z,FA,IA

found biomolecule 3: B,E,L,M,N,W,X,Y,Z,FA,IA

4URH

130 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=4urh): 8092 ms

reading 27180 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: ABXY

Default Van der Waals type for model set to Jmol

27180 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 633 ms