OCA:5AKR

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__51464226561166226__ initializing

Jmol getValue debug null

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Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__51464226561166226__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=5AKR"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5akr)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5akr

The Resolver thinks MMCif

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loadScript /oca-docs/jsmol/j2s/core/corebio.z.js

TITLE: Sub-Atomic Resolution X-Ray Crystallography and Neutron Crystallography: Promise, Challenges and Potential.

ACT = ACETATE ION

CU = COPPER (II) ION

HOH = WATER

MLI = MALONATE ION

NO2 = NITRITE ION

SO4 = SULFATE ION

Setting space group name to HM:P 21 3

biomolecule 1 operators 1,2,3 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K

assembly operator 1 x,y,z

assembly operator 2 -y,z-1/2,-x+1/2

assembly operator 3 -z+1/2,-x,y+1/2

5AKR

10 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5akr): 3783 ms

reading 5251 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: ABCD

Default Van der Waals type for model set to Babel

5251 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 175 ms

TITLE: Sub-Atomic Resolution X-Ray Crystallography and Neutron Crystallography: Promise, Challenges and Potential.

ACT = ACETATE ION

CU = COPPER (II) ION

HOH = WATER

MLI = MALONATE ION

NO2 = NITRITE ION

SO4 = SULFATE ION

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K

5AKR

10 bonds added

Precision set to 4; packing set to 0.02

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Script completed

Jmol script terminated

spinFPS is set too fast (30) -- can't keep up!