OCA:5CCT

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__470899773647313__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__470899773647313__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=5CCT"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5cct)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5cct

The Resolver thinks MMCif

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TITLE: Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party.

DUP = 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE

HOH = WATER

MG = MAGNESIUM ION

Setting space group name to HM:P 21 3

biomolecule 1 operators 1,2,3 ASYM_IDs A,B,C,D,E

found biomolecule 1: A,B,C,D,E

assembly operator 1 x,y,z

assembly operator 2 z-1/2,-x-1/2,-y

assembly operator 3 -y-1/2,-z,x+1/2

5CCT

7 bonds added

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SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5cct): 2691 ms

reading 1354 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

1354 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 105 ms

TITLE: Another look at the mechanism involving trimeric dUTPases in Staphylococcus aureus pathogenicity island induction involves novel players in the party.

DUP = 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE

HOH = WATER

MG = MAGNESIUM ION

found biomolecule 1: A,B,C,D,E

5CCT

7 bonds added

Precision set to 4; packing set to 0.02

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