OCA:5D9S

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__11709202373176__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__11709202373176__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=5D9S"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

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Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

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Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

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Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

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Jmol applet jmolApplet0__11709202373176__ ready

script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5d9s)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5d9s

The Resolver thinks MMCif

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TITLE: Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove.

GOL = GLYCEROL

HOH = WATER

Setting space group name to HM:P 1 21 1

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G

found biomolecule 1: A,B,C,D,E,F,G

5D9S

3 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5d9s): 4108 ms

reading 3450 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

3450 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 94 ms

TITLE: Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove.

GOL = GLYCEROL

HOH = WATER

found biomolecule 1: A,B,C,D,E,F,G

5D9S

3 bonds added

Precision set to 4; packing set to 0.02

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Script completed

Jmol script terminated