OCA:5U4J

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__763596302177171__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__763596302177171__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=5U4J"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

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Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__763596302177171__ ready

script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

Loading, please wait ...

antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5u4j)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5u4j

The Resolver thinks MMCif

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TITLE: Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome.

1MG = 1N-METHYLGUANOSINE-5'-MONOPHOSPHATE

2MA = 2-METHYLADENOSINE-5'-MONOPHOSPHATE

2MG = 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE

4OC = 4N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE

5MC = 5-METHYLCYTIDINE-5'-MONOPHOSPHATE

5MU = 5-METHYLURIDINE 5'-MONOPHOSPHATE

G7M = N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE

MA6 = 6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE

OMC = O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE

OMG = O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE

OMU = O2'-METHYLURIDINE 5'-MONOPHOSPHATE

PSU = PSEUDOURIDINE-5'-MONOPHOSPHATE

UR3 = 3-METHYLURIDINE-5'-MONOPHOSHATE

Setting space group name to HM:P 1

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J

found biomolecule 1: A,B,C,D,E,F,G,H,I,J

5U4J

19 bonds added

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SpaceGroup - 0 settings generated

loadScript /oca-docs/jsmol/j2s/JU/Tensor.js

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Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5u4j): 5117 ms

reading 11360 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

11360 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 259 ms