OCA:5VFM

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__0080027333269355__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__0080027333269355__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=5VFM"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

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Jmol getValue SYNCCallback null

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Jmol applet jmolApplet0__0080027333269355__ ready

script 1 started

loadScript /oca-docs/jsmol/j2s/core/coretext.z.js

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5vfm)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5vfm

The Resolver thinks MMCif

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TITLE: Structural studies with BnSP-7 reveal an atypical oligomeric conformation compared to phospholipases A2-like toxins.

Setting space group name to HM:P 1 21 1

HC4 = 4'-HYDROXYCINNAMIC ACID

HOH = WATER

ME2 = 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE

SO4 = SULFATE ION

5VFM

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P

212 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=5vfm): 2471 ms

reading 2203 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: A

Default Van der Waals type for model set to Jmol

2203 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 79 ms

TITLE: Structural studies with BnSP-7 reveal an atypical oligomeric conformation compared to phospholipases A2-like toxins.

HC4 = 4'-HYDROXYCINNAMIC ACID

HOH = WATER

ME2 = 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE

SO4 = SULFATE ION

5VFM

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P

212 bonds added

Precision set to 4; packing set to 0.02

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Script completed

Jmol script terminated