OCA:6H8T

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JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__7510058869867628__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__7510058869867628__)

vwrOptions:

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=6H8T"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

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Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

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Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

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Jmol getValue RESIZECallback null

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Jmol applet jmolApplet0__7510058869867628__ ready

script 1 started

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antialiasDisplay = false

FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6h8t)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6h8t

The Resolver thinks MMCif

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TITLE: Crystallographic evidence for unexpected selective tyrosine hydroxylations in an aerated achiral Ru-papain conjugate.

ACT = ACETATE ION

CL = CHLORIDE ION

HOH = WATER

NA = SODIUM ION

OMX = (betaR)-beta-hydroxy-L-Tyrosine

SO4 = SULFATE ION

TXY = 3-[(5S)-4,5-dihydroxycyclohexa-1,3-dien-1-yl]-L-alanine

YXX = chloro(1-{5-[di(pyridin-2-yl-kappaN)amino]pentyl}pyrrolidine-2,5-dione)ruthenium

YXZ = chloro[N,N-di(pyridin-2-yl-kappaN)pentane-1,5-diamine]ruthenium

Setting space group name to HM:P 21 21 21

biomolecule 1 operators 1 ASYM_IDs A,C,D,E,F,G,Q

found biomolecule 1: A,C,D,E,F,G,Q

biomolecule 2 operators 1 ASYM_IDs B,H,I,J,K,L,M,N,O,P,R

found biomolecule 2: B,H,I,J,K,L,M,N,O,P,R

6H8T

8 bonds added

loadScript /oca-docs/jsmol/j2s/core/coresym.z.js

SpaceGroup - 0 settings generated

Precision set to 4; packing set to 0.02

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6h8t): 4448 ms

reading 3796 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

3796 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 118 ms