OCA:6Y1Z

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Jmol JavaScript applet jmolApplet0__4516787431721263__ initializing

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setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=6Y1Z"

Jmol Version: 16.2.17 2024-06-07 15:31

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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Jmol getValue bgcolor #FFFFFF

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6y1z)

FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6y1z

The Resolver thinks MMCif

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TITLE: The Binding of Palonosetron and Other Antiemetic Drugs to the Serotonin 5-HT3 Receptor.

BMA = beta-D-mannopyranose

NAG = 2-acetamido-2-deoxy-beta-D-glucopyranose

O7B = (3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one

Setting space group name to HM:P 1

biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA

6Y1Z

35 bonds added

Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6y1z): 3955 ms

reading 16610 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

16610 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 373 ms

TITLE: The Binding of Palonosetron and Other Antiemetic Drugs to the Serotonin 5-HT3 Receptor.

BMA = beta-D-mannopyranose

NAG = 2-acetamido-2-deoxy-beta-D-glucopyranose

O7B = (3~{a}~{S})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA

6Y1Z

35 bonds added

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Script completed

Jmol script terminated

spinFPS is set too fast (30) -- can't keep up!