loadScript /oca-docs/jsmol/j2s/core/package.js
loadScript /oca-docs/jsmol/j2s/core/corejmol.z.js
loadScript /oca-docs/jsmol/j2s/J/translation/PO.js
loadScript /oca-docs/jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__284088984962279__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__284088984962279__)
vwrOptions:
{ "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolApplet0","syncId":"284088984962279","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolApplet0_canvas2d","documentBase":"https://oca.weizmann.ac.il/oca-bin/ccpeek?id=6ZZ2","codePath":"https:/oca-docs/jsmol/j2s/","fullName":"jmolApplet0__284088984962279__","statusListener":"[J.appletjs.Jmol object]" }
setting document base to "https://oca.weizmann.ac.il/oca-bin/ccpeek?id=6ZZ2"
(C) 2015 Jmol Development
Jmol Version: 16.2.17 2024-06-07 15:31
java.vendor: Java2Script (HTML5)
java.version: 2022-06-24 05:54:49 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
StatusManager APPLETREADYcallback set f=Jmol._readyCallback
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue MODELKITCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SELECTCallback null
Jmol getValue SERVICECallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue SYNCCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__284088984962279__ ready
script 1 started
loadScript /oca-docs/jsmol/j2s/core/coretext.z.js
Loading, please wait ...
antialiasDisplay = false
FileManager.getAtomSetCollectionFromFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6zz2)
FileManager opening url https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6zz2
The Resolver thinks MMCif
loadScript /oca-docs/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js
loadScript /oca-docs/jsmol/j2s/J/adapter/readers/cif/CifReader.js
loadScript /oca-docs/jsmol/j2s/JU/CifDataParser.js
loadScript /oca-docs/jsmol/j2s/core/corebio.z.js
TITLE: Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin
DMS = DIMETHYL SULFOXIDE
F63 = N-methyl-1-[5-(pyridin-3-yloxy)furan-2-yl]methanamine
GOL = GLYCEROL
HOH = WATER
Setting space group name to Hall:P 2yb
Setting space group name to HM:P 1 21 1
biomolecule 1 operators 1 ASYM_IDs A,B,C,D,E,F,G,H
found biomolecule 1: A,B,C,D,E,F,G,H
loadScript /oca-docs/jsmol/j2s/core/coresym.z.js
SpaceGroup - 0 settings generated
Setting space group name to Hall:P 2yb
Setting space group name to 4
6ZZ2
1 bonds added
Precision set to 4; packing set to 0.02
Time for openFile(https://oca.weizmann.ac.il/oca-bin/sendStructure?id=6zz2): 2444 ms
reading 5073 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Babel
5073 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 153 ms
TITLE: Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin
DMS = DIMETHYL SULFOXIDE
F63 = N-methyl-1-[5-(pyridin-3-yloxy)furan-2-yl]methanamine
GOL = GLYCEROL
HOH = WATER
found biomolecule 1: A,B,C,D,E,F,G,H
6ZZ2
1 bonds added
Precision set to 4; packing set to 0.02
loadScript /oca-docs/jsmol/j2s/J/thread/SpinThread.js
Script completed
Jmol script terminated