Analysis of interatomic Contacts of Structural Units in PDB entry:
10BR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10BR entry

There are 4 chains in PDB entry 10BR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 271	PHE 474
B	ILE 276	PHE 474
C	ILE 276	PHE 474
D	GLY 271	PHE 474

There are 28 helices in PDB entry 10BR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	292	300	Right-handed alpha
Helix 2	AA2	A	318	324	Right-handed alpha
Helix 3	AA3	A	341	350	Right-handed alpha
Helix 4	AA4	A	381	388	Right-handed alpha
Helix 5	AA5	A	399	406	Right-handed alpha
Helix 6	AA6	A	421	428	Right-handed 310
Helix 7	AA7	A	446	454	Right-handed alpha
Helix 8	AA8	B	292	299	Right-handed alpha
Helix 9	AA9	B	318	324	Right-handed alpha
Helix 10	AB1	B	341	350	Right-handed alpha
Helix 11	AB2	B	381	388	Right-handed alpha
Helix 12	AB3	B	399	406	Right-handed alpha
Helix 13	AB4	B	421	426	Right-handed alpha
Helix 14	AB5	B	446	454	Right-handed alpha
Helix 15	AB6	C	292	299	Right-handed alpha
Helix 16	AB7	C	318	323	Right-handed alpha
Helix 17	AB8	C	341	350	Right-handed alpha
Helix 18	AB9	C	381	387	Right-handed alpha
Helix 19	AC1	C	399	406	Right-handed alpha
Helix 20	AC2	C	421	428	Right-handed alpha
Helix 21	AC3	C	446	454	Right-handed alpha
Helix 22	AC4	D	292	299	Right-handed alpha
Helix 23	AC5	D	318	324	Right-handed alpha
Helix 24	AC6	D	341	350	Right-handed alpha
Helix 25	AC7	D	381	388	Right-handed alpha
Helix 26	AC8	D	399	406	Right-handed alpha
Helix 27	AC9	D	421	428	Right-handed 310
Helix 28	AD1	D	446	454	Right-handed alpha

There are 20 sheets in PDB entry 10BR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	376	377	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	311	314	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	357	364	anti-parallel
Strand 4	A	367	374	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	415	418	anti-parallel
Strand 3	A	435	439	anti-parallel
Strand 4	A	442	443	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	415	418	anti-parallel
Strand 3	A	435	439	anti-parallel
Strand 4	A	459	465	anti-parallel
Strand 5	A	468	474	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	376	377	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	311	314	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	330	334	anti-parallel
Strand 3	B	357	364	anti-parallel
Strand 4	B	367	374	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	397	first strand
Strand 2	B	415	420	anti-parallel
Strand 3	B	435	439	anti-parallel
Strand 4	B	442	443	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	397	first strand
Strand 2	B	415	420	anti-parallel
Strand 3	B	435	439	anti-parallel
Strand 4	B	459	465	anti-parallel
Strand 5	B	468	474	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	376	377	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	311	314	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	357	364	anti-parallel
Strand 4	C	367	374	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	415	420	anti-parallel
Strand 3	C	435	439	anti-parallel
Strand 4	C	442	443	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	415	420	anti-parallel
Strand 3	C	435	439	anti-parallel
Strand 4	C	459	465	anti-parallel
Strand 5	C	468	474	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	280	first strand
Strand 2	D	376	377	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	311	314	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	330	334	anti-parallel
Strand 3	D	357	364	anti-parallel
Strand 4	D	367	374	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	397	first strand
Strand 2	D	415	419	anti-parallel
Strand 3	D	435	439	anti-parallel
Strand 4	D	442	443	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	397	first strand
Strand 2	D	415	419	anti-parallel
Strand 3	D	435	439	anti-parallel
Strand 4	D	459	465	anti-parallel
Strand 5	D	468	474	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10BR

Analysis of interatomic Contacts of Structural Units in PDB entry:
10BR