Analysis of interatomic Contacts of Structural Units in PDB entry:
10DB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10DB entry

There are 3 chains in PDB entry 10DB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 23	PHE 424
A	THR 23	PHE 424
C	THR 23	PHE 424

There are 6 helices in PDB entry 10DB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	24	29	Right-handed alpha
Helix 2	AA2	B	312	316	Right-handed 310
Helix 3	AA3	A	25	29	Right-handed alpha
Helix 4	AA4	A	312	316	Right-handed 310
Helix 5	AA5	C	25	29	Right-handed alpha
Helix 6	AA6	C	312	316	Right-handed 310

There are 6 sheets in PDB entry 10DB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	215	217	anti-parallel
Strand 3	B	230	242	anti-parallel
Strand 4	B	248	260	anti-parallel
Strand 5	B	272	283	anti-parallel
Strand 6	B	286	295	anti-parallel
Strand 7	B	335	347	anti-parallel
Strand 8	B	351	363	anti-parallel
Strand 9	B	373	385	anti-parallel
Strand 10	B	390	401	anti-parallel
Strand 11	B	411	424	anti-parallel
Strand 12	B	33	47	anti-parallel
Strand 13	B	61	77	anti-parallel
Strand 14	B	80	92	anti-parallel
Strand 15	B	108	118	anti-parallel
Strand 16	B	123	131	anti-parallel
Strand 17	B	145	153	anti-parallel
Strand 18	B	159	169	anti-parallel
Strand 19	B	201	208	anti-parallel
Strand 20	B	220	226	anti-parallel
Strand 21	B	230	242	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	332	333	anti-parallel

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There are 21 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	215	217	anti-parallel
Strand 3	A	230	242	anti-parallel
Strand 4	A	248	260	anti-parallel
Strand 5	A	272	283	anti-parallel
Strand 6	A	286	295	anti-parallel
Strand 7	A	335	347	anti-parallel
Strand 8	A	351	363	anti-parallel
Strand 9	A	373	385	anti-parallel
Strand 10	A	390	401	anti-parallel
Strand 11	A	411	424	anti-parallel
Strand 12	A	33	47	anti-parallel
Strand 13	A	61	77	anti-parallel
Strand 14	A	80	92	anti-parallel
Strand 15	A	108	118	anti-parallel
Strand 16	A	123	131	anti-parallel
Strand 17	A	145	153	anti-parallel
Strand 18	A	159	169	anti-parallel
Strand 19	A	201	208	anti-parallel
Strand 20	A	220	226	anti-parallel
Strand 21	A	230	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	332	333	anti-parallel

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There are 21 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	216	217	anti-parallel
Strand 3	C	230	242	anti-parallel
Strand 4	C	248	260	anti-parallel
Strand 5	C	272	283	anti-parallel
Strand 6	C	286	295	anti-parallel
Strand 7	C	335	347	anti-parallel
Strand 8	C	351	363	anti-parallel
Strand 9	C	373	385	anti-parallel
Strand 10	C	390	401	anti-parallel
Strand 11	C	411	424	anti-parallel
Strand 12	C	33	47	anti-parallel
Strand 13	C	61	77	anti-parallel
Strand 14	C	80	92	anti-parallel
Strand 15	C	108	118	anti-parallel
Strand 16	C	123	131	anti-parallel
Strand 17	C	145	153	anti-parallel
Strand 18	C	159	169	anti-parallel
Strand 19	C	201	208	anti-parallel
Strand 20	C	220	226	anti-parallel
Strand 21	C	230	242	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	332	333	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10DB

Analysis of interatomic Contacts of Structural Units in PDB entry:
10DB