Analysis of interatomic Contacts of Structural Units in PDB entry:
10DJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10DJ entry

There are 2 chains in PDB entry 10DJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 263TYR 531
B
 VAL 263PHE 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 10DJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
267 269Right-handed 310
Helix 2
AA2
A
307 321Right-handed alpha
Helix 3
AA3
A
350 357Right-handed alpha
Helix 4
AA4
A
358 362Right-handed 310
Helix 5
AA5
A
363 384Right-handed alpha
Helix 6
AA6
A
392 394Right-handed 310
Helix 7
AA7
A
400 402Right-handed 310
Helix 8
AA8
A
429 433Right-handed 310
Helix 9
AA9
A
434 441Right-handed alpha
Helix 10
AB1
A
444 461Right-handed alpha
Helix 11
AB2
A
471 481Right-handed alpha
Helix 12
AB3
A
492 503Right-handed alpha
Helix 13
AB4
A
506 510Right-handed 310
Helix 14
AB5
A
512 524Right-handed alpha
Helix 15
AB6
B
267 269Right-handed 310
Helix 16
AB7
B
307 321Right-handed alpha
Helix 17
AB8
B
350 356Right-handed alpha
Helix 18
AB9
B
357 362Right-handed 310
Helix 19
AC1
B
363 384Right-handed alpha
Helix 20
AC2
B
392 394Right-handed 310
Helix 21
AC3
B
400 402Right-handed 310
Helix 22
AC4
B
429 433Right-handed 310
Helix 23
AC5
B
434 441Right-handed alpha
Helix 24
AC6
B
444 460Right-handed alpha
Helix 25
AC7
B
471 481Right-handed alpha
Helix 26
AC8
B
492 503Right-handed alpha
Helix 27
AC9
B
506 510Right-handed 310
Helix 28
AD1
B
512 524Right-handed alpha
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There are 8 sheets in PDB entry 10DJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 279first strand
Strand 2
A
284 290anti-parallel
Strand 3
A
294 300anti-parallel
Strand 4
A
339 343anti-parallel
Strand 5
A
329 333anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
396 398anti-parallel
Strand 3
A
404 406anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
413 414anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
442 443anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 279first strand
Strand 2
B
283 290anti-parallel
Strand 3
B
294 301anti-parallel
Strand 4
B
339 343anti-parallel
Strand 5
B
329 333anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
396 398anti-parallel
Strand 3
B
404 406anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
413 414anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
442 443anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il