Analysis of interatomic Contacts of Structural Units in PDB entry:
10DK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10DK entry

There are 3 chains in PDB entry 10DK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	THR 1019
B	MET 1	GLY 1016
C	MET 6	THR 1019

There are 64 helices in PDB entry 10DK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	19	24	Right-handed alpha
Helix 3	AA3	A	25	35	Right-handed alpha
Helix 4	AA4	A	97	99	Right-handed 310
Helix 5	AA5	A	378	384	Right-handed 310
Helix 6	AA6	A	398	401	Right-handed 310
Helix 7	AA7	A	433	445	Right-handed alpha
Helix 8	AA8	A	462	467	Right-handed alpha
Helix 9	AA9	A	531	545	Right-handed alpha
Helix 10	AB1	A	546	549	Right-handed 310
Helix 11	AB2	A	550	554	Right-handed 310
Helix 12	AB3	A	568	575	Right-handed alpha
Helix 13	AB4	A	578	582	Right-handed 310
Helix 14	AB5	A	608	617	Right-handed alpha
Helix 15	AB6	A	668	673	Right-handed alpha
Helix 16	AB7	A	691	702	Right-handed alpha
Helix 17	AB8	A	704	708	Right-handed 310
Helix 18	AB9	A	773	778	Right-handed alpha
Helix 19	AC1	A	782	784	Right-handed 310
Helix 20	AC2	A	831	843	Right-handed alpha
Helix 21	AC3	A	853	857	Right-handed 310
Helix 22	AC4	B	2	13	Right-handed alpha
Helix 23	AC5	B	19	24	Right-handed alpha
Helix 24	AC6	B	25	35	Right-handed alpha
Helix 25	AC7	B	97	99	Right-handed 310
Helix 26	AC8	B	191	195	Right-handed 310
Helix 27	AC9	B	378	384	Right-handed 310
Helix 28	AD1	B	398	401	Right-handed 310
Helix 29	AD2	B	408	412	Right-handed 310
Helix 30	AD3	B	433	444	Right-handed alpha
Helix 31	AD4	B	462	467	Right-handed alpha
Helix 32	AD5	B	531	545	Right-handed alpha
Helix 33	AD6	B	546	549	Right-handed 310
Helix 34	AD7	B	550	554	Right-handed 310
Helix 35	AD8	B	568	575	Right-handed alpha
Helix 36	AD9	B	578	582	Right-handed 310
Helix 37	AE1	B	608	619	Right-handed alpha
Helix 38	AE2	B	656	660	Right-handed alpha
Helix 39	AE3	B	691	702	Right-handed alpha
Helix 40	AE4	B	773	778	Right-handed alpha
Helix 41	AE5	B	782	784	Right-handed 310
Helix 42	AE6	B	831	843	Right-handed alpha
Helix 43	AE7	B	861	866	Right-handed alpha
Helix 44	AE8	C	8	13	Right-handed alpha
Helix 45	AE9	C	19	24	Right-handed alpha
Helix 46	AF1	C	25	35	Right-handed alpha
Helix 47	AF2	C	378	384	Right-handed 310
Helix 48	AF3	C	398	401	Right-handed 310
Helix 49	AF4	C	433	444	Right-handed alpha
Helix 50	AF5	C	462	467	Right-handed alpha
Helix 51	AF6	C	531	545	Right-handed alpha
Helix 52	AF7	C	546	549	Right-handed 310
Helix 53	AF8	C	550	554	Right-handed 310
Helix 54	AF9	C	568	575	Right-handed alpha
Helix 55	AG1	C	578	582	Right-handed 310
Helix 56	AG2	C	608	619	Right-handed alpha
Helix 57	AG3	C	656	660	Right-handed alpha
Helix 58	AG4	C	668	673	Right-handed alpha
Helix 59	AG5	C	691	703	Right-handed alpha
Helix 60	AG6	C	773	778	Right-handed alpha
Helix 61	AG7	C	782	784	Right-handed 310
Helix 62	AG8	C	831	843	Right-handed alpha
Helix 63	AG9	C	853	857	Right-handed 310
Helix 64	AH1	C	861	866	Right-handed alpha

There are 53 sheets in PDB entry 10DK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	675	686	anti-parallel
Strand 3	A	100	108	anti-parallel
Strand 4	A	623	630	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	645	654	anti-parallel
Strand 4	A	87	88	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	645	654	anti-parallel
Strand 4	A	414	417	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	641	642	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	C	518	522	parallel
Strand 4	C	491	499	anti-parallel
Strand 5	A	269	275	anti-parallel
Strand 6	A	351	356	anti-parallel
Strand 7	A	226	231	parallel
Strand 8	A	176	177	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	C	518	522	parallel
Strand 4	C	491	499	anti-parallel
Strand 5	C	507	510	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	185	189	anti-parallel
Strand 3	A	201	202	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	263	266	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	369	first strand
Strand 2	A	385	388	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	661	663	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	480	first strand
Strand 2	A	528	530	anti-parallel
Strand 3	B	480	483	anti-parallel
Strand 4	B	528	529	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	483	first strand
Strand 2	C	528	530	anti-parallel
Strand 3	C	479	481	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	491	498	anti-parallel
Strand 3	A	518	522	anti-parallel
Strand 4	B	167	174	parallel
Strand 5	B	133	137	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	491	498	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	351	356	anti-parallel
Strand 5	B	226	231	parallel
Strand 6	B	176	177	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	712	first strand
Strand 2	A	991	997	anti-parallel
Strand 3	A	1005	1011	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	717	724	first strand
Strand 2	A	982	989	anti-parallel
Strand 3	A	745	752	anti-parallel
Strand 4	A	939	942	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	738	first strand
Strand 2	A	967	975	anti-parallel
Strand 3	A	786	793	anti-parallel
Strand 4	A	797	799	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	738	first strand
Strand 2	A	967	975	anti-parallel
Strand 3	A	786	793	anti-parallel
Strand 4	A	811	812	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	823	824	first strand
Strand 2	A	829	830	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	867	874	first strand
Strand 2	A	926	933	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	675	686	anti-parallel
Strand 3	B	100	108	anti-parallel
Strand 4	B	623	624	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	675	686	anti-parallel
Strand 3	B	100	108	anti-parallel
Strand 4	B	627	630	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	645	654	anti-parallel
Strand 4	B	87	88	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	645	654	anti-parallel
Strand 4	B	414	417	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	641	642	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	185	189	anti-parallel
Strand 3	B	201	202	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	263	265	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	369	first strand
Strand 2	B	385	388	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	661	663	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	591	592	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	491	498	anti-parallel
Strand 3	B	518	522	anti-parallel
Strand 4	C	167	174	parallel
Strand 5	C	133	137	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	491	498	anti-parallel
Strand 3	C	269	275	anti-parallel
Strand 4	C	351	356	anti-parallel
Strand 5	C	228	231	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	709	712	first strand
Strand 2	B	991	997	anti-parallel
Strand 3	B	1005	1011	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	724	first strand
Strand 2	B	982	989	anti-parallel
Strand 3	B	745	752	anti-parallel
Strand 4	B	939	942	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	738	first strand
Strand 2	B	967	975	anti-parallel
Strand 3	B	786	793	anti-parallel
Strand 4	B	797	798	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	731	738	first strand
Strand 2	B	967	975	anti-parallel
Strand 3	B	786	793	anti-parallel
Strand 4	B	811	812	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	824	first strand
Strand 2	B	829	830	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	867	874	first strand
Strand 2	B	926	933	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	675	686	anti-parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	623	630	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	645	654	anti-parallel
Strand 4	C	87	88	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	645	654	anti-parallel
Strand 4	C	414	417	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	641	642	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	200	202	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	263	266	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	369	first strand
Strand 2	C	385	388	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	661	663	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	468	469	first strand
Strand 2	C	591	592	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	712	first strand
Strand 2	C	991	997	anti-parallel
Strand 3	C	1005	1011	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	724	first strand
Strand 2	C	982	989	anti-parallel
Strand 3	C	745	752	anti-parallel
Strand 4	C	939	942	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	738	first strand
Strand 2	C	967	975	anti-parallel
Strand 3	C	791	793	anti-parallel
Strand 4	C	797	799	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	738	first strand
Strand 2	C	967	975	anti-parallel
Strand 3	C	786	789	anti-parallel
Strand 4	C	811	812	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	823	824	first strand
Strand 2	C	829	830	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	867	874	first strand
Strand 2	C	926	933	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10DK

Analysis of interatomic Contacts of Structural Units in PDB entry:
10DK