Analysis of interatomic Contacts of Structural Units in PDB entry:
10DN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10DN entry

There are 3 chains in PDB entry 10DN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 63	PHE 473
B	ALA 63	PHE 473
C	ALA 63	PHE 473

There are 15 helices in PDB entry 10DN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	78	Right-handed alpha
Helix 2	AA2	A	298	303	Right-handed alpha
Helix 3	AA3	A	325	329	Right-handed 310
Helix 4	AA4	A	348	359	Right-handed alpha
Helix 5	AA5	A	411	415	Right-handed 310
Helix 6	AA6	B	64	79	Right-handed alpha
Helix 7	AA7	B	298	303	Right-handed alpha
Helix 8	AA8	B	325	329	Right-handed 310
Helix 9	AA9	B	348	359	Right-handed alpha
Helix 10	AB1	B	411	415	Right-handed 310
Helix 11	AB2	C	64	79	Right-handed alpha
Helix 12	AB3	C	298	303	Right-handed alpha
Helix 13	AB4	C	325	329	Right-handed 310
Helix 14	AB5	C	348	359	Right-handed alpha
Helix 15	AB6	C	411	415	Right-handed 310

There are 6 sheets in PDB entry 10DN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	103	120	anti-parallel
Strand 3	A	125	136	anti-parallel
Strand 4	A	163	172	anti-parallel
Strand 5	A	177	184	anti-parallel
Strand 6	A	213	220	anti-parallel
Strand 7	A	231	240	anti-parallel
Strand 8	A	261	270	anti-parallel
Strand 9	A	279	295	anti-parallel
Strand 10	A	308	324	anti-parallel
Strand 11	A	331	343	anti-parallel
Strand 12	A	369	380	anti-parallel
Strand 13	A	385	394	anti-parallel
Strand 14	A	418	429	anti-parallel
Strand 15	A	432	445	anti-parallel
Strand 16	A	457	472	anti-parallel
Strand 17	A	86	96	anti-parallel
Strand 18	A	103	120	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	401	402	parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	103	120	anti-parallel
Strand 3	B	125	136	anti-parallel
Strand 4	B	163	172	anti-parallel
Strand 5	B	177	184	anti-parallel
Strand 6	B	213	220	anti-parallel
Strand 7	B	231	240	anti-parallel
Strand 8	B	261	270	anti-parallel
Strand 9	B	279	295	anti-parallel
Strand 10	B	308	324	anti-parallel
Strand 11	B	331	343	anti-parallel
Strand 12	B	369	380	anti-parallel
Strand 13	B	385	394	anti-parallel
Strand 14	B	418	429	anti-parallel
Strand 15	B	432	445	anti-parallel
Strand 16	B	457	472	anti-parallel
Strand 17	B	86	96	anti-parallel
Strand 18	B	103	120	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	401	402	parallel

Back to list of sheets
Back to top of page

There are 18 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	104	120	anti-parallel
Strand 3	C	125	136	anti-parallel
Strand 4	C	163	172	anti-parallel
Strand 5	C	177	184	anti-parallel
Strand 6	C	213	220	anti-parallel
Strand 7	C	231	240	anti-parallel
Strand 8	C	261	270	anti-parallel
Strand 9	C	280	295	anti-parallel
Strand 10	C	308	323	anti-parallel
Strand 11	C	331	343	anti-parallel
Strand 12	C	369	380	anti-parallel
Strand 13	C	385	394	anti-parallel
Strand 14	C	418	429	anti-parallel
Strand 15	C	432	445	anti-parallel
Strand 16	C	457	472	anti-parallel
Strand 17	C	86	96	anti-parallel
Strand 18	C	104	120	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	401	402	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10DN

Analysis of interatomic Contacts of Structural Units in PDB entry:
10DN