Analysis of interatomic Contacts of Structural Units in PDB entry:
10DP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10DP entry

There are 3 chains in PDB entry 10DP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	GLY 955
B	MET 6	THR 958
C	MET 7	THR 958

There are 69 helices in PDB entry 10DP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	14	Right-handed alpha
Helix 2	AA2	A	19	24	Right-handed alpha
Helix 3	AA3	A	25	35	Right-handed alpha
Helix 4	AA4	A	41	45	Right-handed 310
Helix 5	AA5	A	97	99	Right-handed 310
Helix 6	AA6	A	318	323	Right-handed 310
Helix 7	AA7	A	337	340	Right-handed 310
Helix 8	AA8	A	372	383	Right-handed alpha
Helix 9	AA9	A	401	406	Right-handed alpha
Helix 10	AB1	A	470	484	Right-handed alpha
Helix 11	AB2	A	485	488	Right-handed 310
Helix 12	AB3	A	489	493	Right-handed 310
Helix 13	AB4	A	507	514	Right-handed alpha
Helix 14	AB5	A	517	521	Right-handed 310
Helix 15	AB6	A	535	539	Right-handed 310
Helix 16	AB7	A	547	556	Right-handed alpha
Helix 17	AB8	A	595	599	Right-handed alpha
Helix 18	AB9	A	630	642	Right-handed alpha
Helix 19	AC1	A	712	717	Right-handed alpha
Helix 20	AC2	A	721	723	Right-handed 310
Helix 21	AC3	A	770	782	Right-handed alpha
Helix 22	AC4	A	801	805	Right-handed 310
Helix 23	AC5	A	825	829	Right-handed 310
Helix 24	AC6	B	8	13	Right-handed alpha
Helix 25	AC7	B	19	24	Right-handed alpha
Helix 26	AC8	B	25	35	Right-handed alpha
Helix 27	AC9	B	41	45	Right-handed 310
Helix 28	AD1	B	97	99	Right-handed 310
Helix 29	AD2	B	318	323	Right-handed 310
Helix 30	AD3	B	337	340	Right-handed 310
Helix 31	AD4	B	372	383	Right-handed alpha
Helix 32	AD5	B	401	406	Right-handed alpha
Helix 33	AD6	B	470	484	Right-handed alpha
Helix 34	AD7	B	489	493	Right-handed 310
Helix 35	AD8	B	507	514	Right-handed alpha
Helix 36	AD9	B	517	521	Right-handed 310
Helix 37	AE1	B	547	556	Right-handed alpha
Helix 38	AE2	B	595	599	Right-handed alpha
Helix 39	AE3	B	630	642	Right-handed alpha
Helix 40	AE4	B	712	717	Right-handed alpha
Helix 41	AE5	B	721	723	Right-handed 310
Helix 42	AE6	B	770	782	Right-handed alpha
Helix 43	AE7	B	792	796	Right-handed 310
Helix 44	AE8	B	894	897	Right-handed 310
Helix 45	AE9	B	898	903	Right-handed alpha
Helix 46	AF1	C	8	13	Right-handed alpha
Helix 47	AF2	C	19	24	Right-handed alpha
Helix 48	AF3	C	25	35	Right-handed alpha
Helix 49	AF4	C	41	45	Right-handed 310
Helix 50	AF5	C	194	198	Right-handed 310
Helix 51	AF6	C	277	281	Right-handed 310
Helix 52	AF7	C	318	323	Right-handed 310
Helix 53	AF8	C	337	340	Right-handed 310
Helix 54	AF9	C	372	383	Right-handed alpha
Helix 55	AG1	C	401	406	Right-handed alpha
Helix 56	AG2	C	470	484	Right-handed alpha
Helix 57	AG3	C	485	488	Right-handed 310
Helix 58	AG4	C	489	493	Right-handed 310
Helix 59	AG5	C	507	514	Right-handed alpha
Helix 60	AG6	C	517	522	Right-handed 310
Helix 61	AG7	C	547	556	Right-handed alpha
Helix 62	AG8	C	595	599	Right-handed alpha
Helix 63	AG9	C	630	641	Right-handed alpha
Helix 64	AH1	C	712	717	Right-handed alpha
Helix 65	AH2	C	721	723	Right-handed 310
Helix 66	AH3	C	769	782	Right-handed alpha
Helix 67	AH4	C	801	803	Right-handed 310
Helix 68	AH5	C	825	829	Right-handed 310
Helix 69	AH6	C	898	903	Right-handed alpha

There are 48 sheets in PDB entry 10DP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	614	625	anti-parallel
Strand 3	A	100	108	anti-parallel
Strand 4	A	562	569	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	79	88	anti-parallel
Strand 3	A	584	593	anti-parallel
Strand 4	A	353	356	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	C	457	461	parallel
Strand 4	C	430	437	anti-parallel
Strand 5	A	269	275	anti-parallel
Strand 6	A	290	295	anti-parallel
Strand 7	A	226	231	parallel
Strand 8	A	176	177	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	C	457	461	parallel
Strand 4	C	430	437	anti-parallel
Strand 5	C	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	185	190	anti-parallel
Strand 3	A	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	600	602	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	530	531	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	C	467	469	anti-parallel
Strand 4	C	418	422	anti-parallel
Strand 5	B	467	469	anti-parallel
Strand 6	B	418	420	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	430	437	anti-parallel
Strand 3	A	457	461	anti-parallel
Strand 4	B	167	174	parallel
Strand 5	B	133	137	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	430	437	anti-parallel
Strand 3	B	269	275	anti-parallel
Strand 4	B	290	295	anti-parallel
Strand 5	B	226	231	parallel
Strand 6	B	176	177	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	651	first strand
Strand 2	A	930	936	anti-parallel
Strand 3	A	944	950	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	663	first strand
Strand 2	A	921	928	anti-parallel
Strand 3	A	684	691	anti-parallel
Strand 4	A	878	881	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	677	first strand
Strand 2	A	906	914	anti-parallel
Strand 3	A	725	732	anti-parallel
Strand 4	A	736	737	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	677	first strand
Strand 2	A	906	914	anti-parallel
Strand 3	A	725	732	anti-parallel
Strand 4	A	750	751	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	763	first strand
Strand 2	A	768	769	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	813	first strand
Strand 2	A	865	872	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	614	625	anti-parallel
Strand 3	B	100	108	anti-parallel
Strand 4	B	562	569	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	79	88	anti-parallel
Strand 3	B	584	593	anti-parallel
Strand 4	B	353	356	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	182	first strand
Strand 2	B	185	189	anti-parallel
Strand 3	B	201	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	600	602	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	530	531	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	449	first strand
Strand 2	B	430	437	anti-parallel
Strand 3	B	457	461	anti-parallel
Strand 4	C	167	174	parallel
Strand 5	C	133	137	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	449	first strand
Strand 2	B	430	437	anti-parallel
Strand 3	C	269	275	anti-parallel
Strand 4	C	290	295	anti-parallel
Strand 5	C	226	231	parallel
Strand 6	C	176	177	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	651	first strand
Strand 2	B	930	936	anti-parallel
Strand 3	B	944	950	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	663	first strand
Strand 2	B	921	928	anti-parallel
Strand 3	B	684	691	anti-parallel
Strand 4	B	878	881	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	677	first strand
Strand 2	B	906	914	anti-parallel
Strand 3	B	730	732	anti-parallel
Strand 4	B	736	737	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	677	first strand
Strand 2	B	906	914	anti-parallel
Strand 3	B	725	728	anti-parallel
Strand 4	B	750	751	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	763	first strand
Strand 2	B	768	769	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	813	first strand
Strand 2	B	865	873	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	614	625	anti-parallel
Strand 3	C	99	108	anti-parallel
Strand 4	C	562	569	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	584	593	anti-parallel
Strand 4	C	87	88	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	79	84	anti-parallel
Strand 3	C	584	593	anti-parallel
Strand 4	C	353	356	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	580	581	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	185	190	anti-parallel
Strand 3	C	200	202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	260	first strand
Strand 2	C	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	308	first strand
Strand 2	C	324	327	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	600	602	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	651	first strand
Strand 2	C	930	936	anti-parallel
Strand 3	C	944	950	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	663	first strand
Strand 2	C	921	928	anti-parallel
Strand 3	C	684	691	anti-parallel
Strand 4	C	878	881	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	669	677	first strand
Strand 2	C	906	914	anti-parallel
Strand 3	C	725	732	anti-parallel
Strand 4	C	736	738	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	669	677	first strand
Strand 2	C	906	914	anti-parallel
Strand 3	C	725	732	anti-parallel
Strand 4	C	750	751	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	813	first strand
Strand 2	C	865	873	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10DP

Analysis of interatomic Contacts of Structural Units in PDB entry:
10DP