Analysis of interatomic Contacts of Structural Units in PDB entry:
10EF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10EF entry

There is 1 chain in PDB entry 10EF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ASN 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 10EF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 21Right-handed alpha
Helix 2
AA2
A
22 36Right-handed alpha
Helix 3
AA3
A
36 43Right-handed alpha
Helix 4
AA4
A
49 56Right-handed alpha
Helix 5
AA5
A
64 78Right-handed alpha
Helix 6
AA6
A
103 108Right-handed 310
Helix 7
AA7
A
119 127Right-handed alpha
Helix 8
AA8
A
128 133Right-handed alpha
Helix 9
AA9
A
134 136Right-handed 310
Helix 10
AB1
A
137 145Right-handed alpha
Helix 11
AB2
A
147 153Right-handed alpha
Helix 12
AB3
A
157 165Right-handed alpha
Helix 13
AB4
A
165 192Right-handed alpha
Helix 14
AB5
A
210 220Right-handed alpha
Helix 15
AB6
A
230 235Right-handed alpha
Helix 16
AB7
A
265 269Right-handed 310
Helix 17
AB8
A
270 285Right-handed alpha
Helix 18
AB9
A
312 328Right-handed alpha
Helix 19
AC1
A
336 346Right-handed alpha
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There are 3 sheets in PDB entry 10EF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
96 99anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
224 229parallel
Strand 3
A
201 205parallel
Strand 4
A
259 263parallel
Strand 5
A
291 296parallel
Strand 6
A
361 366anti-parallel
Strand 7
A
350 354anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
334 335parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il