Analysis of interatomic Contacts of Structural Units in PDB entry:
10EP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10EP entry

There are 2 chains in PDB entry 10EP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 108	ASN 915
A	GLY 108	ASN 915

There are 26 helices in PDB entry 10EP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	114	122	Right-handed alpha
Helix 2	AA2	B	150	154	Right-handed 310
Helix 3	AA3	B	315	327	Right-handed alpha
Helix 4	AA4	B	374	378	Right-handed 310
Helix 5	AA5	B	456	460	Right-handed 310
Helix 6	AA6	B	697	702	Right-handed alpha
Helix 7	AA7	B	719	724	Right-handed alpha
Helix 8	AA8	B	748	767	Right-handed alpha
Helix 9	AA9	B	781	794	Right-handed alpha
Helix 10	AB1	B	809	813	Right-handed 310
Helix 11	AB2	B	827	833	Right-handed alpha
Helix 12	AB3	B	839	843	Right-handed 310
Helix 13	AB4	B	861	875	Right-handed alpha
Helix 14	AB5	B	893	912	Right-handed alpha
Helix 15	AB6	A	114	122	Right-handed alpha
Helix 16	AB7	A	148	153	Right-handed 310
Helix 17	AB8	A	315	327	Right-handed alpha
Helix 18	AB9	A	374	378	Right-handed 310
Helix 19	AC1	A	718	726	Right-handed 310
Helix 20	AC2	A	744	747	Right-handed 310
Helix 21	AC3	A	748	768	Right-handed alpha
Helix 22	AC4	A	782	794	Right-handed alpha
Helix 23	AC5	A	827	835	Right-handed alpha
Helix 24	AC6	A	836	840	Right-handed 310
Helix 25	AC7	A	862	875	Right-handed alpha
Helix 26	AC8	A	893	912	Right-handed alpha

There are 26 sheets in PDB entry 10EP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	180	184	anti-parallel
Strand 4	B	195	196	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	162	165	anti-parallel
Strand 3	B	170	171	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	211	first strand
Strand 2	B	217	223	anti-parallel
Strand 3	B	234	239	anti-parallel
Strand 4	B	244	247	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	229	230	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	329	334	anti-parallel
Strand 4	B	339	341	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	298	first strand
Strand 2	A	879	883	anti-parallel
Strand 3	A	847	851	parallel
Strand 4	A	800	804	parallel
Strand 5	A	770	777	parallel
Strand 6	A	684	689	parallel
Strand 7	A	728	731	parallel
Strand 8	A	665	672	anti-parallel
Strand 9	A	652	659	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	359	365	anti-parallel
Strand 3	B	380	386	anti-parallel
Strand 4	B	391	397	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	420	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	447	453	anti-parallel
Strand 4	B	463	468	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	479	first strand
Strand 2	B	482	489	anti-parallel
Strand 3	B	494	500	anti-parallel
Strand 4	B	510	516	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	551	559	anti-parallel
Strand 3	B	564	572	anti-parallel
Strand 4	B	580	583	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	537	539	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	605	606	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	596	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	624	629	anti-parallel
Strand 4	B	634	637	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	659	first strand
Strand 2	B	665	672	anti-parallel
Strand 3	B	728	731	anti-parallel
Strand 4	B	684	689	parallel
Strand 5	B	770	780	parallel
Strand 6	B	800	804	parallel
Strand 7	B	847	852	parallel
Strand 8	B	879	884	parallel
Strand 9	A	294	297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	180	184	anti-parallel
Strand 4	A	195	196	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	162	165	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	211	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	234	239	anti-parallel
Strand 4	A	245	247	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	329	333	anti-parallel
Strand 3	A	339	341	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	353	first strand
Strand 2	A	359	363	anti-parallel
Strand 3	A	380	386	anti-parallel
Strand 4	A	391	398	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	419	first strand
Strand 2	A	427	433	anti-parallel
Strand 3	A	452	453	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	419	first strand
Strand 2	A	427	433	anti-parallel
Strand 3	A	447	450	anti-parallel
Strand 4	A	463	467	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	489	first strand
Strand 2	A	494	500	anti-parallel
Strand 3	A	510	513	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	551	556	anti-parallel
Strand 3	A	567	572	anti-parallel
Strand 4	A	578	583	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	A	537	539	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	605	606	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	596	first strand
Strand 2	A	611	616	anti-parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	635	637	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10EP

Analysis of interatomic Contacts of Structural Units in PDB entry:
10EP