Analysis of interatomic Contacts of Structural Units in PDB entry:
10EQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10EQ entry

There are 2 chains in PDB entry 10EQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 110	ASN 915
B	TYR 110	ASN 915

There are 26 helices in PDB entry 10EQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	116	122	Right-handed alpha
Helix 2	AA2	A	315	326	Right-handed alpha
Helix 3	AA3	A	334	338	Right-handed 310
Helix 4	AA4	A	718	726	Right-handed 310
Helix 5	AA5	A	744	747	Right-handed 310
Helix 6	AA6	A	748	768	Right-handed alpha
Helix 7	AA7	A	781	794	Right-handed alpha
Helix 8	AA8	A	809	813	Right-handed 310
Helix 9	AA9	A	828	834	Right-handed alpha
Helix 10	AB1	A	839	843	Right-handed 310
Helix 11	AB2	A	861	875	Right-handed alpha
Helix 12	AB3	A	895	912	Right-handed alpha
Helix 13	AB4	B	114	122	Right-handed alpha
Helix 14	AB5	B	148	153	Right-handed alpha
Helix 15	AB6	B	315	326	Right-handed alpha
Helix 16	AB7	B	374	378	Right-handed 310
Helix 17	AB8	B	718	723	Right-handed 310
Helix 18	AB9	B	744	749	Right-handed 310
Helix 19	AC1	B	750	755	Right-handed alpha
Helix 20	AC2	B	757	767	Right-handed alpha
Helix 21	AC3	B	782	794	Right-handed alpha
Helix 22	AC4	B	809	813	Right-handed 310
Helix 23	AC5	B	827	834	Right-handed alpha
Helix 24	AC6	B	836	843	Right-handed 310
Helix 25	AC7	B	861	875	Right-handed alpha
Helix 26	AC8	B	893	912	Right-handed alpha

There are 20 sheets in PDB entry 10EQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	182	184	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	162	165	anti-parallel
Strand 3	A	170	171	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	220	223	anti-parallel
Strand 3	A	235	236	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	329	331	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	397	398	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	590	first strand
Strand 2	A	614	618	anti-parallel
Strand 3	A	621	626	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	659	first strand
Strand 2	A	665	672	anti-parallel
Strand 3	A	728	731	anti-parallel
Strand 4	A	684	690	parallel
Strand 5	A	770	779	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	804	first strand
Strand 2	A	847	852	parallel
Strand 3	A	879	884	parallel
Strand 4	B	294	297	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	180	184	anti-parallel
Strand 4	B	195	196	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	162	164	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	211	first strand
Strand 2	B	217	223	anti-parallel
Strand 3	B	234	239	anti-parallel
Strand 4	B	245	247	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	265	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	329	334	anti-parallel
Strand 4	B	337	341	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	362	365	anti-parallel
Strand 3	B	380	385	anti-parallel
Strand 4	B	391	398	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	420	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	447	453	anti-parallel
Strand 4	B	463	468	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	479	first strand
Strand 2	B	482	489	anti-parallel
Strand 3	B	494	499	anti-parallel
Strand 4	B	510	515	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	551	560	anti-parallel
Strand 3	B	563	572	anti-parallel
Strand 4	B	578	583	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	537	539	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	605	606	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	596	first strand
Strand 2	B	611	617	anti-parallel
Strand 3	B	624	629	anti-parallel
Strand 4	B	634	637	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	659	first strand
Strand 2	B	665	672	anti-parallel
Strand 3	B	728	731	anti-parallel
Strand 4	B	684	689	parallel
Strand 5	B	770	779	parallel
Strand 6	B	800	804	parallel
Strand 7	B	847	852	parallel
Strand 8	B	879	884	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10EQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
10EQ