Analysis of interatomic Contacts of Structural Units in PDB entry:
10ER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10ER entry

There are 2 chains in PDB entry 10ER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 108	ASN 915
A	GLY 108	ASN 915

There are 26 helices in PDB entry 10ER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	114	122	Right-handed alpha
Helix 2	AA2	B	149	154	Right-handed alpha
Helix 3	AA3	B	315	327	Right-handed alpha
Helix 4	AA4	B	374	378	Right-handed 310
Helix 5	AA5	B	719	726	Right-handed 310
Helix 6	AA6	B	744	748	Right-handed 310
Helix 7	AA7	B	749	768	Right-handed alpha
Helix 8	AA8	B	782	794	Right-handed alpha
Helix 9	AA9	B	809	813	Right-handed 310
Helix 10	AB1	B	827	835	Right-handed alpha
Helix 11	AB2	B	836	840	Right-handed 310
Helix 12	AB3	B	862	875	Right-handed alpha
Helix 13	AB4	B	893	912	Right-handed alpha
Helix 14	AB5	A	114	122	Right-handed alpha
Helix 15	AB6	A	149	154	Right-handed alpha
Helix 16	AB7	A	315	327	Right-handed alpha
Helix 17	AB8	A	374	378	Right-handed 310
Helix 18	AB9	A	719	726	Right-handed 310
Helix 19	AC1	A	744	748	Right-handed 310
Helix 20	AC2	A	749	768	Right-handed alpha
Helix 21	AC3	A	782	794	Right-handed alpha
Helix 22	AC4	A	809	813	Right-handed 310
Helix 23	AC5	A	827	835	Right-handed alpha
Helix 24	AC6	A	836	840	Right-handed 310
Helix 25	AC7	A	862	875	Right-handed alpha
Helix 26	AC8	A	893	912	Right-handed alpha

There are 26 sheets in PDB entry 10ER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	137	142	anti-parallel
Strand 3	B	179	184	anti-parallel
Strand 4	B	195	196	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	162	165	anti-parallel
Strand 3	B	170	171	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	211	first strand
Strand 2	B	217	222	anti-parallel
Strand 3	B	234	239	anti-parallel
Strand 4	B	245	247	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	267	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	329	334	anti-parallel
Strand 4	B	339	341	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	847	852	parallel
Strand 4	A	801	804	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	359	365	anti-parallel
Strand 3	B	380	386	anti-parallel
Strand 4	B	391	398	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	419	first strand
Strand 2	B	427	433	anti-parallel
Strand 3	B	447	453	anti-parallel
Strand 4	B	463	467	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	477	first strand
Strand 2	B	483	489	anti-parallel
Strand 3	B	494	499	anti-parallel
Strand 4	B	510	513	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	527	first strand
Strand 2	B	551	556	anti-parallel
Strand 3	B	567	572	anti-parallel
Strand 4	B	580	583	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	531	first strand
Strand 2	B	537	539	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	543	first strand
Strand 2	B	605	606	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	596	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	624	629	anti-parallel
Strand 4	B	634	637	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	659	first strand
Strand 2	B	665	672	anti-parallel
Strand 3	B	728	731	anti-parallel
Strand 4	B	686	689	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	804	first strand
Strand 2	B	847	852	parallel
Strand 3	B	879	884	parallel
Strand 4	A	294	297	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	137	142	anti-parallel
Strand 3	A	179	184	anti-parallel
Strand 4	A	195	196	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	162	165	anti-parallel
Strand 3	A	170	171	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	211	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	234	239	anti-parallel
Strand 4	A	245	247	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	329	334	anti-parallel
Strand 4	A	339	341	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	353	first strand
Strand 2	A	359	365	anti-parallel
Strand 3	A	380	386	anti-parallel
Strand 4	A	391	398	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	419	first strand
Strand 2	A	427	433	anti-parallel
Strand 3	A	447	453	anti-parallel
Strand 4	A	463	467	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	477	first strand
Strand 2	A	483	489	anti-parallel
Strand 3	A	494	499	anti-parallel
Strand 4	A	510	513	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	527	first strand
Strand 2	A	551	556	anti-parallel
Strand 3	A	567	572	anti-parallel
Strand 4	A	580	583	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	531	first strand
Strand 2	A	537	539	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	605	606	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	596	first strand
Strand 2	A	611	616	anti-parallel
Strand 3	A	624	629	anti-parallel
Strand 4	A	634	637	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	659	first strand
Strand 2	A	665	672	anti-parallel
Strand 3	A	728	731	anti-parallel
Strand 4	A	686	689	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10ER

Analysis of interatomic Contacts of Structural Units in PDB entry:
10ER