Analysis of interatomic Contacts of Structural Units in PDB entry:
10GI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10GI entry

There are 2 chains in PDB entry 10GI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 337
B
 SER 0GLN 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 10GI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
38 48Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
103 114Right-handed alpha
Helix 5
AA5
A
136 140Right-handed 310
Helix 6
AA6
A
153 168Right-handed alpha
Helix 7
AA7
A
203 207Right-handed 310
Helix 8
AA8
A
214 223Right-handed alpha
Helix 9
AA9
A
224 227Right-handed 310
Helix 10
AB1
A
256 268Right-handed alpha
Helix 11
AB2
A
284 289Right-handed 310
Helix 12
AB3
A
319 335Right-handed alpha
Helix 13
AB4
B
11 21Right-handed alpha
Helix 14
AB5
B
22 24Right-handed 310
Helix 15
AB6
B
38 48Right-handed alpha
Helix 16
AB7
B
103 113Right-handed alpha
Helix 17
AB8
B
151 168Right-handed alpha
Helix 18
AB9
B
214 223Right-handed alpha
Helix 19
AC1
B
224 227Right-handed 310
Helix 20
AC2
B
256 270Right-handed alpha
Helix 21
AC3
B
284 289Right-handed 310
Helix 22
AC4
B
320 336Right-handed alpha
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There are 4 sheets in PDB entry 10GI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
27 33parallel
Strand 5
A
3 8parallel
Strand 6
A
93 96parallel
Strand 7
A
118 120parallel
Strand 8
A
146 148parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
230 236anti-parallel
Strand 3
A
170 179parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
309 316anti-parallel
Strand 6
A
295 298anti-parallel
Strand 7
A
276 279parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
65 67anti-parallel
Strand 3
B
72 76anti-parallel
Strand 4
B
27 33parallel
Strand 5
B
3 8parallel
Strand 6
B
94 96parallel
Strand 7
B
119 120parallel
Strand 8
B
147 148parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
230 236anti-parallel
Strand 3
B
173 179parallel
Strand 4
B
243 247anti-parallel
Strand 5
B
312 316anti-parallel
Strand 6
B
296 298anti-parallel
Strand 7
B
277 279parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il