Analysis of interatomic Contacts of Structural Units in PDB entry:
10GW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10GW entry

There are 3 chains in PDB entry 10GW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -2LYS 332
B
 GLN -2LYS 331
C
 MET 1MET 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 68 helices in PDB entry 10GW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
53 61Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
128 130Right-handed 310
Helix 7
AA7
A
131 136Right-handed alpha
Helix 8
AA8
A
144 159Right-handed alpha
Helix 9
AA9
A
177 182Right-handed 310
Helix 10
AB1
A
191 220Right-handed alpha
Helix 11
AB2
A
221 223Right-handed 310
Helix 12
AB3
A
227 231Right-handed 310
Helix 13
AB4
A
235 243Right-handed alpha
Helix 14
AB5
A
251 264Right-handed alpha
Helix 15
AB6
A
278 290Right-handed alpha
Helix 16
AB7
A
294 308Right-handed alpha
Helix 17
AB8
A
312 327Right-handed alpha
Helix 18
AB9
B
9 22Right-handed alpha
Helix 19
AC1
B
32 43Right-handed alpha
Helix 20
AC2
B
53 61Right-handed alpha
Helix 21
AC3
B
76 90Right-handed alpha
Helix 22
AC4
B
103 117Right-handed alpha
Helix 23
AC5
B
128 130Right-handed 310
Helix 24
AC6
B
131 136Right-handed alpha
Helix 25
AC7
B
144 151Right-handed alpha
Helix 26
AC8
B
151 159Right-handed alpha
Helix 27
AC9
B
177 182Right-handed 310
Helix 28
AD1
B
191 220Right-handed alpha
Helix 29
AD2
B
221 223Right-handed 310
Helix 30
AD3
B
227 231Right-handed 310
Helix 31
AD4
B
235 243Right-handed alpha
Helix 32
AD5
B
251 264Right-handed alpha
Helix 33
AD6
B
278 290Right-handed alpha
Helix 34
AD7
B
294 308Right-handed alpha
Helix 35
AD8
B
312 327Right-handed alpha
Helix 36
AD9
C
9 22Right-handed alpha
Helix 37
AE1
C
33 43Right-handed alpha
Helix 38
AE2
C
53 61Right-handed alpha
Helix 39
AE3
C
76 90Right-handed alpha
Helix 40
AE4
C
103 117Right-handed alpha
Helix 41
AE5
C
128 130Right-handed 310
Helix 42
AE6
C
131 136Right-handed alpha
Helix 43
AE7
C
144 159Right-handed alpha
Helix 44
AE8
C
177 182Right-handed 310
Helix 45
AE9
C
191 221Right-handed alpha
Helix 46
AF1
C
227 231Right-handed 310
Helix 47
AF2
C
235 243Right-handed alpha
Helix 48
AF3
C
251 264Right-handed alpha
Helix 49
AF4
C
278 290Right-handed alpha
Helix 50
AF5
C
294 308Right-handed alpha
Helix 51
AF6
C
312 327Right-handed alpha
Helix 52
AF7
D
9 22Right-handed alpha
Helix 53
AF8
D
32 43Right-handed alpha
Helix 54
AF9
D
53 61Right-handed alpha
Helix 55
AG1
D
76 90Right-handed alpha
Helix 56
AG2
D
103 117Right-handed alpha
Helix 57
AG3
D
128 130Right-handed 310
Helix 58
AG4
D
131 136Right-handed alpha
Helix 59
AG5
D
144 159Right-handed alpha
Helix 60
AG6
D
177 182Right-handed 310
Helix 61
AG7
D
191 220Right-handed alpha
Helix 62
AG8
D
221 223Right-handed 310
Helix 63
AG9
D
227 231Right-handed 310
Helix 64
AH1
D
235 243Right-handed alpha
Helix 65
AH2
D
251 264Right-handed alpha
Helix 66
AH3
D
278 290Right-handed alpha
Helix 67
AH4
D
294 308Right-handed alpha
Helix 68
AH5
D
312 327Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 10GW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
68 71parallel
Strand 5
A
95 98parallel
Strand 6
A
120 127parallel
Strand 7
A
138 142anti-parallel
Strand 8
A
184 188parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
68 71parallel
Strand 5
B
95 98parallel
Strand 6
B
120 127parallel
Strand 7
B
138 142anti-parallel
Strand 8
B
184 188parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 50first strand
Strand 2
C
25 29parallel
Strand 3
C
2 6parallel
Strand 4
C
68 71parallel
Strand 5
C
95 98parallel
Strand 6
C
120 127parallel
Strand 7
C
138 142anti-parallel
Strand 8
C
184 188parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 29first strand
Strand 2
D
2 6parallel
Strand 3
D
68 71parallel
Strand 4
D
95 98parallel
Strand 5
D
120 127parallel
Strand 6
D
138 142anti-parallel
Strand 7
D
184 188parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il