Analysis of interatomic Contacts of Structural Units in PDB entry:
10HO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10HO entry

There is 1 chain in PDB entry 10HO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -8ARG 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 10HO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
19 31Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
38 57Right-handed alpha
Helix 5
AA5
A
63 73Right-handed alpha
Helix 6
AA6
A
85 95Right-handed alpha
Helix 7
AA7
A
98 101Right-handed 310
Helix 8
AA8
A
102 110Right-handed alpha
Helix 9
AA9
A
114 116Right-handed 310
Helix 10
AB1
A
146 165Right-handed alpha
Helix 11
AB2
A
243 246Right-handed 310
Helix 12
AB3
A
254 267Right-handed alpha
Helix 13
AB4
A
268 278Right-handed alpha
Helix 14
AB5
A
303 307Right-handed 310
Helix 15
AB6
A
319 330Right-handed alpha
Helix 16
AB7
A
371 386Right-handed alpha
Helix 17
AB8
A
452 475Right-handed alpha
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There are 5 sheets in PDB entry 10HO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
124 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
210 212anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
234 241anti-parallel
Strand 3
A
393 403parallel
Strand 4
A
439 447anti-parallel
Strand 5
A
334 338anti-parallel
Strand 6
A
360 363anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
299 301parallel
Strand 3
A
366 367anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
414 416parallel
Strand 3
A
432 433anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il