Analysis of interatomic Contacts of Structural Units in PDB entry:
10JF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10JF entry

There are 3 chains in PDB entry 10JF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22ALA 859
C
 U 1 A 22
D
 A 4 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 10JF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 82Right-handed alpha
Helix 2
AA2
A
140 149Right-handed alpha
Helix 3
AA3
A
156 167Right-handed alpha
Helix 4
AA4
A
168 174Right-handed alpha
Helix 5
AA5
A
229 239Right-handed alpha
Helix 6
AA6
A
251 263Right-handed alpha
Helix 7
AA7
A
288 291Right-handed 310
Helix 8
AA8
A
308 315Right-handed alpha
Helix 9
AA9
A
357 369Right-handed alpha
Helix 10
AB1
A
371 384Right-handed alpha
Helix 11
AB2
A
385 386Right-handed 310
Helix 12
AB3
A
387 390Right-handed 310
Helix 13
AB4
A
391 398Right-handed alpha
Helix 14
AB5
A
463 479Right-handed alpha
Helix 15
AB6
A
500 512Right-handed alpha
Helix 16
AB7
A
527 539Right-handed alpha
Helix 17
AB8
A
549 554Right-handed alpha
Helix 18
AB9
A
556 571Right-handed alpha
Helix 19
AC1
A
641 658Right-handed alpha
Helix 20
AC2
A
676 695Right-handed alpha
Helix 21
AC3
A
719 723Right-handed 310
Helix 22
AC4
A
775 787Right-handed alpha
Helix 23
AC5
A
800 818Right-handed alpha
Helix 24
AC6
A
838 847Right-handed alpha
Helix 25
AC7
A
850 855Right-handed 310
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There are 7 sheets in PDB entry 10JF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 631first strand
Strand 2
A
611 616anti-parallel
Strand 3
A
592 599anti-parallel
Strand 4
A
664 669parallel
Strand 5
A
702 708parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
747 750anti-parallel
Strand 8
A
734 736anti-parallel
Strand 9
A
407 412anti-parallel
Strand 10
A
38 42anti-parallel
Strand 11
A
715 717anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 209first strand
Strand 2
A
212 224anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
400 401anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
126 139anti-parallel
Strand 4
A
113 119anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
279 283anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
344 346anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
306 307anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 420anti-parallel
Strand 3
A
576 578anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 455first strand
Strand 2
A
517 522parallel
Strand 3
A
543 548parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il