Analysis of interatomic Contacts of Structural Units in PDB entry:
10JI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10JI entry

There are 4 chains in PDB entry 10JI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	ALA 859
B	ALA 9	ALA 305
C	U 1	A 22
D	A 3	A 16

There are 37 helices in PDB entry 10JI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	82	Right-handed alpha
Helix 2	AA2	A	140	149	Right-handed alpha
Helix 3	AA3	A	155	174	Right-handed alpha
Helix 4	AA4	A	229	239	Right-handed alpha
Helix 5	AA5	A	242	246	Right-handed 310
Helix 6	AA6	A	251	263	Right-handed alpha
Helix 7	AA7	A	308	315	Right-handed alpha
Helix 8	AA8	A	357	369	Right-handed alpha
Helix 9	AA9	A	371	386	Right-handed alpha
Helix 10	AB1	A	391	398	Right-handed alpha
Helix 11	AB2	A	463	482	Right-handed alpha
Helix 12	AB3	A	497	499	Right-handed 310
Helix 13	AB4	A	500	512	Right-handed alpha
Helix 14	AB5	A	526	539	Right-handed alpha
Helix 15	AB6	A	548	554	Right-handed alpha
Helix 16	AB7	A	556	571	Right-handed alpha
Helix 17	AB8	A	584	589	Right-handed 310
Helix 18	AB9	A	641	658	Right-handed alpha
Helix 19	AC1	A	672	674	Right-handed 310
Helix 20	AC2	A	675	695	Right-handed alpha
Helix 21	AC3	A	719	723	Right-handed 310
Helix 22	AC4	A	775	787	Right-handed alpha
Helix 23	AC5	A	800	818	Right-handed alpha
Helix 24	AC6	A	838	846	Right-handed alpha
Helix 25	AC7	A	851	855	Right-handed 310
Helix 26	AC8	B	55	68	Right-handed alpha
Helix 27	AC9	B	96	105	Right-handed alpha
Helix 28	AD1	B	109	130	Right-handed alpha
Helix 29	AD2	B	138	140	Right-handed 310
Helix 30	AD3	B	146	150	Right-handed 310
Helix 31	AD4	B	189	195	Right-handed alpha
Helix 32	AD5	B	201	216	Right-handed alpha
Helix 33	AD6	B	228	243	Right-handed alpha
Helix 34	AD7	B	244	250	Right-handed alpha
Helix 35	AD8	B	254	266	Right-handed alpha
Helix 36	AD9	B	273	289	Right-handed alpha
Helix 37	AE1	B	296	305	Right-handed alpha

There are 11 sheets in PDB entry 10JI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	632	first strand
Strand 2	A	610	617	anti-parallel
Strand 3	A	591	599	anti-parallel
Strand 4	A	663	669	parallel
Strand 5	A	701	708	parallel
Strand 6	A	763	770	anti-parallel
Strand 7	A	746	751	anti-parallel
Strand 8	A	734	736	anti-parallel
Strand 9	A	406	412	anti-parallel
Strand 10	A	36	42	anti-parallel
Strand 11	A	715	717	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	180	182	anti-parallel
Strand 3	A	196	209	anti-parallel
Strand 4	A	212	225	anti-parallel
Strand 5	A	44	48	anti-parallel
Strand 6	A	400	401	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	99	102	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	126	139	anti-parallel
Strand 5	A	113	119	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	327	330	anti-parallel
Strand 3	A	278	284	anti-parallel
Strand 4	A	266	269	anti-parallel
Strand 5	A	344	346	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	305	307	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	428	first strand
Strand 2	A	418	419	anti-parallel
Strand 3	A	577	578	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	494	first strand
Strand 2	A	451	455	parallel
Strand 3	A	517	521	parallel
Strand 4	A	544	547	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	34	36	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	30	32	anti-parallel
Strand 3	B	44	48	anti-parallel
Strand 4	B	86	90	anti-parallel
Strand 5	B	76	79	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	162	163	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	153	155	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10JI

Analysis of interatomic Contacts of Structural Units in PDB entry:
10JI