Analysis of interatomic Contacts of Structural Units in PDB entry:
10LJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 10LJ entry

There are 3 chains in PDB entry 10LJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7GLY 119
B
 MET 1ALA 140
C
 GLY 2SER 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 10LJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 10Right-handed 310
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
17 23Right-handed 310
Helix 4
AA4
B
2 21Right-handed alpha
Helix 5
AA5
B
83 97Right-handed alpha
Helix 6
AA6
B
98 102Right-handed 310
Helix 7
AA7
C
63 67Right-handed 310
Helix 8
AA8
C
165 177Right-handed alpha
Helix 9
AA9
C
188 193Right-handed alpha
Helix 10
AB1
C
233 240Right-handed alpha
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There are 10 sheets in PDB entry 10LJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
47 50anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
40 41anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
76 77anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
110 112anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
128 138anti-parallel
Strand 3
B
117 123anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
113 115anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 26first strand
Strand 2
C
39 44anti-parallel
Strand 3
C
80 84anti-parallel
Strand 4
C
70 76anti-parallel
Strand 5
C
55 60anti-parallel
Strand 6
C
105 110anti-parallel
Strand 7
C
17 26anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 126first strand
Strand 2
C
152 159anti-parallel
Strand 3
C
218 225anti-parallel
Strand 4
C
196 206anti-parallel
Strand 5
C
179 182anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 126first strand
Strand 2
C
152 159anti-parallel
Strand 3
C
218 225anti-parallel
Strand 4
C
196 206anti-parallel
Strand 5
C
230 232anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 134first strand
Strand 2
C
143 149anti-parallel
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