Analysis of interatomic Contacts of Structural Units in PDB entry:
10MJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10MJ entry

There are 8 chains in PDB entry 10MJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
E	GLY 28	GLY 109
Q	G 17	C 45
P	G 9	C 37
R	C 11	G 20
C	SER 26	SER 1139
D	GLY -1	ALA 1282

There are101 helices in PDB entry 10MJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	203	224	Right-handed alpha
Helix 6	AA6	B	30	45	Right-handed alpha
Helix 7	AA7	B	72	82	Right-handed alpha
Helix 8	AA8	B	108	110	Right-handed 310
Helix 9	AA9	B	203	224	Right-handed alpha
Helix 10	AB1	E	33	37	Right-handed 310
Helix 11	AB2	E	39	44	Right-handed alpha
Helix 12	AB3	E	49	71	Right-handed alpha
Helix 13	AB4	E	90	101	Right-handed alpha
Helix 14	AB5	C	54	66	Right-handed alpha
Helix 15	AB6	C	67	77	Right-handed alpha
Helix 16	AB7	C	84	91	Right-handed alpha
Helix 17	AB8	C	118	125	Right-handed alpha
Helix 18	AB9	C	234	241	Right-handed alpha
Helix 19	AC1	C	244	250	Right-handed alpha
Helix 20	AC2	C	256	264	Right-handed alpha
Helix 21	AC3	C	269	282	Right-handed alpha
Helix 22	AC4	C	288	301	Right-handed alpha
Helix 23	AC5	C	311	321	Right-handed alpha
Helix 24	AC6	C	334	350	Right-handed alpha
Helix 25	AC7	C	380	406	Right-handed alpha
Helix 26	AC8	C	413	418	Right-handed alpha
Helix 27	AC9	C	420	433	Right-handed alpha
Helix 28	AD1	C	444	452	Right-handed alpha
Helix 29	AD2	C	476	480	Right-handed 310
Helix 30	AD3	C	532	537	Right-handed alpha
Helix 31	AD4	C	582	586	Right-handed 310
Helix 32	AD5	C	589	594	Right-handed 310
Helix 33	AD6	C	596	600	Right-handed 310
Helix 34	AD7	C	601	612	Right-handed alpha
Helix 35	AD8	C	630	639	Right-handed alpha
Helix 36	AD9	C	739	744	Right-handed alpha
Helix 37	AE1	C	778	782	Right-handed 310
Helix 38	AE2	C	856	858	Right-handed 310
Helix 39	AE3	C	900	904	Right-handed 310
Helix 40	AE4	C	921	926	Right-handed alpha
Helix 41	AE5	C	928	943	Right-handed alpha
Helix 42	AE6	C	953	957	Right-handed 310
Helix 43	AE7	C	981	991	Right-handed alpha
Helix 44	AE8	C	1036	1040	Right-handed 310
Helix 45	AE9	C	1069	1080	Right-handed alpha
Helix 46	AF1	C	1081	1090	Right-handed alpha
Helix 47	AF2	C	1095	1108	Right-handed alpha
Helix 48	AF3	C	1118	1130	Right-handed alpha
Helix 49	AF4	D	16	24	Right-handed alpha
Helix 50	AF5	D	48	53	Right-handed alpha
Helix 51	AF6	D	84	90	Right-handed 310
Helix 52	AF7	D	112	119	Right-handed alpha
Helix 53	AF8	D	121	130	Right-handed alpha
Helix 54	AF9	D	140	187	Right-handed alpha
Helix 55	AG1	D	190	228	Right-handed alpha
Helix 56	AG2	D	237	248	Right-handed alpha
Helix 57	AG3	D	257	267	Right-handed alpha
Helix 58	AG4	D	269	283	Right-handed alpha
Helix 59	AG5	D	285	305	Right-handed alpha
Helix 60	AG6	D	308	311	Right-handed 310
Helix 61	AG7	D	321	325	Right-handed 310
Helix 62	AG8	D	338	361	Right-handed alpha
Helix 63	AG9	D	363	383	Right-handed alpha
Helix 64	AH1	D	402	406	Right-handed 310
Helix 65	AH2	D	412	417	Right-handed alpha
Helix 66	AH3	D	445	452	Right-handed alpha
Helix 67	AH4	D	452	463	Right-handed alpha
Helix 68	AH5	D	468	479	Right-handed alpha
Helix 69	AH6	D	484	491	Right-handed alpha
Helix 70	AH7	D	505	507	Right-handed 310
Helix 71	AH8	D	525	527	Right-handed 310
Helix 72	AH9	D	528	533	Right-handed alpha
Helix 73	AI1	D	548	558	Right-handed alpha
Helix 74	AI2	D	579	589	Right-handed alpha
Helix 75	AI3	D	614	624	Right-handed alpha
Helix 76	AI4	D	643	651	Right-handed alpha
Helix 77	AI5	D	652	655	Right-handed 310
Helix 78	AI6	D	667	675	Right-handed alpha
Helix 79	AI7	D	689	702	Right-handed alpha
Helix 80	AI8	D	705	726	Right-handed alpha
Helix 81	AI9	D	741	762	Right-handed alpha
Helix 82	AJ1	D	766	793	Right-handed alpha
Helix 83	AJ2	D	797	805	Right-handed alpha
Helix 84	AJ3	D	810	819	Right-handed alpha
Helix 85	AJ4	D	849	881	Right-handed alpha
Helix 86	AJ5	D	945	956	Right-handed alpha
Helix 87	AJ6	D	964	968	Right-handed 310
Helix 88	AJ7	D	975	980	Right-handed alpha
Helix 89	AJ8	D	994	1005	Right-handed alpha
Helix 90	AJ9	D	1027	1036	Right-handed alpha
Helix 91	AK1	D	1117	1126	Right-handed alpha
Helix 92	AK2	D	1126	1146	Right-handed alpha
Helix 93	AK3	D	1150	1160	Right-handed alpha
Helix 94	AK4	D	1183	1196	Right-handed alpha
Helix 95	AK5	D	1209	1215	Right-handed alpha
Helix 96	AK6	D	1219	1227	Right-handed alpha
Helix 97	AK7	D	1228	1240	Right-handed alpha
Helix 98	AK8	D	1247	1255	Right-handed alpha
Helix 99	AK9	D	1260	1263	Right-handed 310
Helix 100	AL1	D	1264	1269	Right-handed alpha
Helix 101	AL2	D	1275	1282	Right-handed alpha

There are 36 sheets in PDB entry 10MJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	15	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	192	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	134	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	134	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	15	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	107	first strand
Strand 2	D	1271	1274	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel
Strand 3	C	213	216	anti-parallel
Strand 4	C	222	225	anti-parallel
Strand 5	C	232	233	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	568	571	first strand
Strand 2	C	559	562	anti-parallel
Strand 3	C	541	542	anti-parallel
Strand 4	C	578	579	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	917	anti-parallel
Strand 7	C	717	723	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	760	first strand
Strand 2	C	865	877	anti-parallel
Strand 3	C	845	854	anti-parallel
Strand 4	C	795	796	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1137	first strand
Strand 2	D	10	11	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	234	235	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	330	first strand
Strand 2	D	334	335	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	637	first strand
Strand 2	D	662	666	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	900	first strand
Strand 2	D	959	962	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	902	903	first strand
Strand 2	D	911	912	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1080	first strand
Strand 2	D	1061	1068	anti-parallel
Strand 3	D	1051	1058	anti-parallel
Strand 4	D	1103	1105	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10MJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
10MJ