Analysis of interatomic Contacts of Structural Units in PDB entry:
10MY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 10MY entry

There are 6 chains in PDB entry 10MY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	LYS 350
B	GLY 0	LYS 350
C	GLY 1	LYS 350
D	GLY 0	LYS 350
E	GLY 1	LYS 350
F	GLY 0	LYS 350

There are 95 helices in PDB entry 10MY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	55	65	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed alpha
Helix 5	AA5	A	111	119	Right-handed alpha
Helix 6	AA6	A	133	147	Right-handed alpha
Helix 7	AA7	A	182	191	Right-handed alpha
Helix 8	AA8	A	192	194	Right-handed 310
Helix 9	AA9	A	206	219	Right-handed alpha
Helix 10	AB1	A	230	241	Right-handed alpha
Helix 11	AB2	A	246	257	Right-handed alpha
Helix 12	AB3	A	285	295	Right-handed alpha
Helix 13	AB4	A	299	307	Right-handed alpha
Helix 14	AB5	A	314	325	Right-handed alpha
Helix 15	AB6	A	329	336	Right-handed alpha
Helix 16	AB7	A	339	350	Right-handed alpha
Helix 17	AB8	B	1	14	Right-handed alpha
Helix 18	AB9	B	42	54	Right-handed alpha
Helix 19	AC1	B	58	65	Right-handed alpha
Helix 20	AC2	B	103	108	Right-handed alpha
Helix 21	AC3	B	110	118	Right-handed alpha
Helix 22	AC4	B	133	147	Right-handed alpha
Helix 23	AC5	B	182	194	Right-handed alpha
Helix 24	AC6	B	206	219	Right-handed alpha
Helix 25	AC7	B	230	241	Right-handed alpha
Helix 26	AC8	B	243	257	Right-handed alpha
Helix 27	AC9	B	285	294	Right-handed alpha
Helix 28	AD1	B	296	298	Right-handed 310
Helix 29	AD2	B	299	307	Right-handed alpha
Helix 30	AD3	B	314	325	Right-handed alpha
Helix 31	AD4	B	329	335	Right-handed alpha
Helix 32	AD5	B	339	350	Right-handed alpha
Helix 33	AD6	C	2	13	Right-handed alpha
Helix 34	AD7	C	42	54	Right-handed alpha
Helix 35	AD8	C	55	65	Right-handed alpha
Helix 36	AD9	C	111	119	Right-handed alpha
Helix 37	AE1	C	133	147	Right-handed alpha
Helix 38	AE2	C	182	191	Right-handed alpha
Helix 39	AE3	C	192	194	Right-handed 310
Helix 40	AE4	C	206	219	Right-handed alpha
Helix 41	AE5	C	230	241	Right-handed alpha
Helix 42	AE6	C	246	257	Right-handed alpha
Helix 43	AE7	C	285	295	Right-handed alpha
Helix 44	AE8	C	299	307	Right-handed alpha
Helix 45	AE9	C	314	325	Right-handed alpha
Helix 46	AF1	C	329	336	Right-handed alpha
Helix 47	AF2	C	339	350	Right-handed alpha
Helix 48	AF3	D	1	14	Right-handed alpha
Helix 49	AF4	D	42	52	Right-handed alpha
Helix 50	AF5	D	58	65	Right-handed alpha
Helix 51	AF6	D	103	108	Right-handed alpha
Helix 52	AF7	D	110	118	Right-handed alpha
Helix 53	AF8	D	133	147	Right-handed alpha
Helix 54	AF9	D	182	194	Right-handed alpha
Helix 55	AG1	D	206	219	Right-handed alpha
Helix 56	AG2	D	230	240	Right-handed alpha
Helix 57	AG3	D	243	257	Right-handed alpha
Helix 58	AG4	D	285	294	Right-handed alpha
Helix 59	AG5	D	296	298	Right-handed 310
Helix 60	AG6	D	299	307	Right-handed alpha
Helix 61	AG7	D	314	325	Right-handed alpha
Helix 62	AG8	D	329	335	Right-handed alpha
Helix 63	AG9	D	339	350	Right-handed alpha
Helix 64	AH1	E	2	13	Right-handed alpha
Helix 65	AH2	E	42	54	Right-handed alpha
Helix 66	AH3	E	55	65	Right-handed alpha
Helix 67	AH4	E	103	108	Right-handed alpha
Helix 68	AH5	E	111	119	Right-handed alpha
Helix 69	AH6	E	133	147	Right-handed alpha
Helix 70	AH7	E	182	191	Right-handed alpha
Helix 71	AH8	E	192	194	Right-handed 310
Helix 72	AH9	E	206	219	Right-handed alpha
Helix 73	AI1	E	230	241	Right-handed alpha
Helix 74	AI2	E	246	256	Right-handed alpha
Helix 75	AI3	E	285	295	Right-handed alpha
Helix 76	AI4	E	299	305	Right-handed alpha
Helix 77	AI5	E	314	325	Right-handed alpha
Helix 78	AI6	E	329	336	Right-handed alpha
Helix 79	AI7	E	339	350	Right-handed alpha
Helix 80	AI8	F	1	14	Right-handed alpha
Helix 81	AI9	F	42	53	Right-handed alpha
Helix 82	AJ1	F	58	65	Right-handed alpha
Helix 83	AJ2	F	103	108	Right-handed alpha
Helix 84	AJ3	F	110	118	Right-handed alpha
Helix 85	AJ4	F	133	147	Right-handed alpha
Helix 86	AJ5	F	182	194	Right-handed alpha
Helix 87	AJ6	F	206	219	Right-handed alpha
Helix 88	AJ7	F	230	240	Right-handed alpha
Helix 89	AJ8	F	243	257	Right-handed alpha
Helix 90	AJ9	F	285	294	Right-handed alpha
Helix 91	AK1	F	296	298	Right-handed 310
Helix 92	AK2	F	299	307	Right-handed alpha
Helix 93	AK3	F	314	325	Right-handed alpha
Helix 94	AK4	F	329	335	Right-handed alpha
Helix 95	AK5	F	339	350	Right-handed alpha

There are 12 sheets in PDB entry 10MY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	26	30	anti-parallel
Strand 3	A	17	21	anti-parallel
Strand 4	A	91	97	anti-parallel
Strand 5	A	77	83	anti-parallel
Strand 6	A	68	74	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	175	first strand
Strand 2	A	153	157	parallel
Strand 3	A	197	200	parallel
Strand 4	A	221	227	parallel
Strand 5	A	123	128	parallel
Strand 6	A	258	268	parallel
Strand 7	A	275	283	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	27	30	anti-parallel
Strand 3	B	17	21	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	79	86	anti-parallel
Strand 6	B	68	72	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	152	157	parallel
Strand 3	B	197	202	parallel
Strand 4	B	221	227	parallel
Strand 5	B	123	128	parallel
Strand 6	B	258	267	parallel
Strand 7	B	276	283	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	26	30	anti-parallel
Strand 3	C	17	21	anti-parallel
Strand 4	C	91	97	anti-parallel
Strand 5	C	77	83	anti-parallel
Strand 6	C	68	74	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	175	first strand
Strand 2	C	153	157	parallel
Strand 3	C	197	200	parallel
Strand 4	C	221	227	parallel
Strand 5	C	123	128	parallel
Strand 6	C	258	268	parallel
Strand 7	C	275	283	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	27	30	anti-parallel
Strand 3	D	17	21	anti-parallel
Strand 4	D	89	96	anti-parallel
Strand 5	D	79	86	anti-parallel
Strand 6	D	68	72	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	175	first strand
Strand 2	D	152	157	parallel
Strand 3	D	197	202	parallel
Strand 4	D	221	227	parallel
Strand 5	D	123	128	parallel
Strand 6	D	258	267	parallel
Strand 7	D	276	283	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	37	first strand
Strand 2	E	26	30	anti-parallel
Strand 3	E	17	21	anti-parallel
Strand 4	E	91	97	anti-parallel
Strand 5	E	77	83	anti-parallel
Strand 6	E	68	74	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	175	first strand
Strand 2	E	153	157	parallel
Strand 3	E	197	200	parallel
Strand 4	E	221	227	parallel
Strand 5	E	123	128	parallel
Strand 6	E	258	268	parallel
Strand 7	E	275	283	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	35	first strand
Strand 2	F	27	30	anti-parallel
Strand 3	F	17	21	anti-parallel
Strand 4	F	89	96	anti-parallel
Strand 5	F	79	86	anti-parallel
Strand 6	F	68	72	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	175	first strand
Strand 2	F	152	157	parallel
Strand 3	F	197	202	parallel
Strand 4	F	221	227	parallel
Strand 5	F	123	128	parallel
Strand 6	F	258	267	parallel
Strand 7	F	276	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 10MY

Analysis of interatomic Contacts of Structural Units in PDB entry:
10MY